Accounting for horizontal gene transfers explains conflicting hypotheses regarding the position of aquificales in the phylogeny of Bacteria

por Boussau, Bastien, Guéguen, Laurent, Gouy, Manolo
Publicado 2008

A Mixture Model and a Hidden Markov Model to Simultaneously Detect Recombination Breakpoints and Reconstruct Phylogenies

por Boussau, Bastien, Guéguen, Laurent, Gouy, Manolo
Publicado 2009

leBIBI(QBPP): a set of databases and a webtool for automatic phylogenetic analysis of prokaryotic sequences

por Flandrois, Jean-Pierre, Perrière, Guy, Gouy, Manolo
Publicado 2015

Detecting lateral gene transfers by statistical reconciliation of phylogenetic forests

por Abby, Sophie S, Tannier, Eric, Gouy, Manolo, Daubin, Vincent
Publicado 2010

Phylogenomic Test of the Hypotheses for the Evolutionary Origin of Eukaryotes

por Rochette, Nicolas C., Brochier-Armanet, Céline, Gouy, Manolo
Publicado 2014

The Molecular Determinants of Thermoadaptation: Methanococcales as a Case Study

por Lecocq, Michel, Groussin, Mathieu, Gouy, Manolo, Brochier-Armanet, Céline
Publicado 2020

The molecular signal for the adaptation to cold temperature during early life on Earth

por Groussin, Mathieu, Boussau, Bastien, Charles, Sandrine, Blanquart, Samuel, Gouy, Manolo
Publicado 2013

Genome-scale coestimation of species and gene trees

por Boussau, Bastien, Szöllősi, Gergely J., Duret, Laurent, Gouy, Manolo, Tannier, Eric, Daubin, Vincent
Publicado 2013

A divide-and-conquer phylogenomic approach based on character supermatrices resolves early steps in the evolution of the Archaea

por Aouad, Monique, Flandrois, Jean-Pierre, Jauffrit, Frédéric, Gouy, Manolo, Gribaldo, Simonetta, Brochier-Armanet, Céline
Publicado 2022

Toward More Accurate Ancestral Protein Genotype–Phenotype Reconstructions with the Use of Species Tree-Aware Gene Trees

por Groussin, Mathieu, Hobbs, Joanne K., Szöllősi, Gergely J., Gribaldo, Simonetta, Arcus, Vickery L., Gouy, Manolo
Publicado 2015

Gene Acquisitions from Bacteria at the Origins of Major Archaeal Clades Are Vastly Overestimated

por Groussin, Mathieu, Boussau, Bastien, Szöllõsi, Gergely, Eme, Laura, Gouy, Manolo, Brochier-Armanet, Céline, Daubin, Vincent
Publicado 2016

Resurrection of Ancestral Malate Dehydrogenases Reveals the Evolutionary History of Halobacterial Proteins: Deciphering Gene Trajectories and Changes in Biochemical Properties

por Blanquart, Samuel, Groussin, Mathieu, Le Roy, Aline, Szöllosi, Gergely J, Girard, Eric, Franzetti, Bruno, Gouy, Manolo, Madern, Dominique
Publicado 2021

Databases of homologous gene families for comparative genomics

por Penel, Simon, Arigon, Anne-Muriel, Dufayard, Jean-François, Sertier, Anne-Sophie, Daubin, Vincent, Duret, Laurent, Gouy, Manolo, Perrière, Guy
Publicado 2009