Special Issue Introduction: The Wonders and Mysteries Next Generation Sequencing Technologies Help Reveal

por Grabherr, Manfred G., Kaminska, Bozena, Komorowski, Jan
Publicado 2018

Modular and configurable optimal sequence alignment software: Cola

por Zamani, Neda, Sundström, Görel, Höppner, Marc P, Grabherr, Manfred G
Publicado 2014

Combinatorial identification of DNA methylation patterns over age in the human brain

por Torabi Moghadam, Behrooz, Dabrowski, Michal, Kaminska, Bozena, Grabherr, Manfred G., Komorowski, Jan
Publicado 2016

ACES: a machine learning toolbox for clustering analysis and visualization

por Gao, Jiangning, Sundström, Görel, Moghadam, Behrooz Torabi, Zamani, Neda, Grabherr, Manfred G.
Publicado 2018

RNA-sequence data normalization through in silico prediction of reference genes: the bacterial response to DNA damage as case study

por Berghoff, Bork A., Karlsson, Torgny, Källman, Thomas, Wagner, E. Gerhart H., Grabherr, Manfred G.
Publicado 2017

A universal genomic coordinate translator for comparative genomics

por Zamani, Neda, Sundström, Görel, Meadows, Jennifer RS, Höppner, Marc P, Dainat, Jacques, Lantz, Henrik, Haas, Brian J, Grabherr, Manfred G
Publicado 2014

EZTraits: A programmable tool to evaluate multi-site deterministic traits

por Carland, Matt, Pedersen, Haley, Bose, Madhuchanda, Novković, Biljana, Manson, Charles, Lahan, Shany, Pavlenko, Alex, Yazdi, Puya G., Grabherr, Manfred G.
Publicado 2022

MindReader: Unsupervised Classification of Electroencephalographic Data

por Rivas-Carrillo, Salvador Daniel, Akkuratov, Evgeny E., Valdez Ruvalcaba, Hector, Vargas-Sanchez, Angel, Komorowski, Jan, San-Juan, Daniel, Grabherr, Manfred G.
Publicado 2023

Unsupervised genome-wide recognition of local relationship patterns

por Zamani, Neda, Russell, Pamela, Lantz, Henrik, Hoeppner, Marc P, Meadows, Jennifer RS, Vijay, Nagarjun, Mauceli, Evan, di Palma, Federica, Lindblad-Toh, Kerstin, Jern, Patric, Grabherr, Manfred G
Publicado 2013

SumStatsRehab: an efficient algorithm for GWAS summary statistics assessment and restoration

por Matushyn, Mykyta, Bose, Madhuchanda, Mahmoud, Abdallah Amr, Cuthbertson, Lewis, Tello, Carlos, Bircan, Karatuğ Ozan, Terpolovsky, Andrew, Bamunusinghe, Varuna, Khan, Umar, Novković, Biljana, Grabherr, Manfred G., Yazdi, Puya G.
Publicado 2022

Exploiting Nucleotide Composition to Engineer Promoters

por Grabherr, Manfred G., Pontiller, Jens, Mauceli, Evan, Ernst, Wolfgang, Baumann, Martina, Biagi, Tara, Swofford, Ross, Russell, Pamela, Zody, Michael C., Di Palma, Federica, Lindblad-Toh, Kerstin, Grabherr, Reingard M.
Publicado 2011

Serendipitous Meta-Transcriptomics: The Fungal Community of Norway Spruce (Picea abies)

por Delhomme, Nicolas, Sundström, Görel, Zamani, Neda, Lantz, Henrik, Lin, Yao-Cheng, Hvidsten, Torgeir R., Höppner, Marc P., Jern, Patric, Van de Peer, Yves, Lundeberg, Joakim, Grabherr, Manfred G., Street, Nathaniel R.
Publicado 2015

Trinity: reconstructing a full-length transcriptome without a genome from RNA-Seq data

por Grabherr, Manfred G., Haas, Brian J., Yassour, Moran, Levin, Joshua Z., Thompson, Dawn A., Amit, Ido, Adiconis, Xian, Fan, Lin, Raychowdhury, Raktima, Zeng, Qiandong, Chen, Zehua, Mauceli, Evan, Hacohen, Nir, Gnirke, Andreas, Rhind, Nicholas, di Palma, Federica, Birren, Bruce W., Nusbaum, Chad, Lindblad-Toh, Kerstin, Friedman, Nir, Regev, Aviv
Publicado 2011

The genomic basis of adaptive evolution in threespine sticklebacks

por Jones, Felicity C, Grabherr, Manfred G, Chan, Yingguang Frank, Russell, Pamela, Mauceli, Evan, Johnson, Jeremy, Swofford, Ross, Pirun, Mono, Zody, Michael C, White, Simon, Birney, Ewan, Searle, Stephen, Schmutz, Jeremy, Grimwood, Jane, Dickson, Mark C, Myers, Richard M, Miller, Craig T, Summers, Brian R, Knecht, Anne K, Brady, Shannon D, Zhang, Haili, Pollen, Alex A, Howes, Timothy, Amemiya, Chris, Lander, Eric S, Di Palma, Federica, Lindblad-Toh, Kerstin, Kingsley, David M
Publicado 2012

An Improved Canine Genome and a Comprehensive Catalogue of Coding Genes and Non-Coding Transcripts

por Hoeppner, Marc P., Lundquist, Andrew, Pirun, Mono, Meadows, Jennifer R. S., Zamani, Neda, Johnson, Jeremy, Sundström, Görel, Cook, April, FitzGerald, Michael G., Swofford, Ross, Mauceli, Evan, Moghadam, Behrooz Torabi, Greka, Anna, Alföldi, Jessica, Abouelleil, Amr, Aftuck, Lynne, Bessette, Daniel, Berlin, Aaron, Brown, Adam, Gearin, Gary, Lui, Annie, Macdonald, J. Pendexter, Priest, Margaret, Shea, Terrance, Turner-Maier, Jason, Zimmer, Andrew, Lander, Eric S., di Palma, Federica, Lindblad-Toh, Kerstin, Grabherr, Manfred G.
Publicado 2014

Genomic Analysis of the Basal Lineage Fungus Rhizopus oryzae Reveals a Whole-Genome Duplication

por Ma, Li-Jun, Ibrahim, Ashraf S., Skory, Christopher, Grabherr, Manfred G., Burger, Gertraud, Butler, Margi, Elias, Marek, Idnurm, Alexander, Lang, B. Franz, Sone, Teruo, Abe, Ayumi, Calvo, Sarah E., Corrochano, Luis M., Engels, Reinhard, Fu, Jianmin, Hansberg, Wilhelm, Kim, Jung-Mi, Kodira, Chinnappa D., Koehrsen, Michael J., Liu, Bo, Miranda-Saavedra, Diego, O'Leary, Sinead, Ortiz-Castellanos, Lucila, Poulter, Russell, Rodriguez-Romero, Julio, Ruiz-Herrera, José, Shen, Yao-Qing, Zeng, Qiandong, Galagan, James, Birren, Bruce W., Cuomo, Christina A., Wickes, Brian L.
Publicado 2009