Identifying inaccuracies in gene expression estimates from unstranded RNA-seq data

por Pomaznoy, Mikhail, Sethi, Ashu, Greenbaum, Jason, Peters, Bjoern
Publicado 2019

A Meta-Analysis of the Existing Knowledge of Immunoreactivity against Hepatitis C Virus (HCV)

por Kim, Yohan, Vaughan, Kerrie, Greenbaum, Jason, Peters, Bjoern, Law, Mansun, Sette, Alessandro
Publicado 2012

Query enhancement through the practical application of ontology: the IEDB and OBI

por Vita, Randi, Overton, James A, Greenbaum, Jason A, Sette, Alessandro, Peters, Bjoern
Publicado 2013

Ontology Development for the Immune Epitope Database

por Greenbaum, Jason A., Vita, Randi, Zarebski, Laura M., Sette, Alessandro, Peters, Bjoern
Publicado 2009

Estimating tissue-specific peptide abundance from public RNA-Seq data

por Frentzen, Angela, Greenbaum, Jason A., Kim, Haeuk, Peters, Bjoern, Koşaloğlu-Yalçın, Zeynep
Publicado 2023

TiArA: A Virtual Appliance for the Analysis of Tiling Array Data

por Greenbaum, Jason A., Assarsson, Erika, Chung, Jo L., Head, Steven, Sette, Alessandro, Peters, Bjoern
Publicado 2010

Predicting Cell Types and Genetic Variations Contributing to Disease by Combining GWAS and Epigenetic Data

por Gerasimova, Anna, Chavez, Lukas, Li, Bin, Seumois, Gregory, Greenbaum, Jason, Rao, Anjana, Vijayanand, Pandurangan, Peters, Bjoern
Publicado 2013

Towards the prediction of non-peptidic epitopes

por Zierep, Paul F., Vita, Randi, Blazeska, Nina, Moumbock, Aurélien F. A., Greenbaum, Jason A., Peters, Bjoern, Günther, Stefan
Publicado 2022

The Immune Epitope Database 2.0

por Vita, Randi, Zarebski, Laura, Greenbaum, Jason A., Emami, Hussein, Hoof, Ilka, Salimi, Nima, Damle, Rohini, Sette, Alessandro, Peters, Bjoern
Publicado 2010

IEDB‐3D 2.0: Structural data analysis within the Immune Epitope Database

por Mendes, Marcus, Mahita, Jarjapu, Blazeska, Nina, Greenbaum, Jason, Ha, Brendan, Wheeler, Kelly, Wang, Jiyao, Shackelford, Deborah, Sette, Alessandro, Peters, Bjoern
Publicado 2023

Towards Defining Molecular Determinants Recognized by Adaptive Immunity in Allergic Disease: An Inventory of the Available Data

por Vaughan, Kerrie, Greenbaum, Jason, Kim, Yohan, Vita, Randi, Chung, Jo, Peters, Bjoern, Broide, David, Goodman, Richard, Grey, Howard, Sette, Alessandro
Publicado 2010

Properties of MHC Class I Presented Peptides That Enhance Immunogenicity

por Calis, Jorg J. A., Maybeno, Matt, Greenbaum, Jason A., Weiskopf, Daniela, De Silva, Aruna D., Sette, Alessandro, Keşmir, Can, Peters, Bjoern
Publicado 2013

Combined assessment of MHC binding and antigen abundance improves T cell epitope predictions

por Koşaloğlu-Yalçın, Zeynep, Lee, Jenny, Greenbaum, Jason, Schoenberger, Stephen P., Miller, Aaron, Kim, Young J., Sette, Alessandro, Nielsen, Morten, Peters, Bjoern
Publicado 2022

A behind‐the‐scenes tour of the IEDB curation process: an optimized process empirically integrating automation and human curation efforts

por Salimi, Nima, Edwards, Lindy, Foos, Gabriele, Greenbaum, Jason A., Martini, Sheridan, Reardon, Brian, Shackelford, Deborah, Vita, Randi, Zalman, Leora, Peters, Bjoern, Sette, Alessandro
Publicado 2020

Developmentally distinct CD4(+) T(reg) lineages shape the CD8(+) T cell response to acute Listeria infection

por Dolina, Joseph S., Lee, Joey, Moore, Eugene L., Hope, Jennifer L., Gracias, Donald T., Matsutani, Takaji, Chawla, Ashu, Greenbaum, Jason A., Linden, Joel, Schoenberger, Stephen P.
Publicado 2022

Immune epitope database analysis resource

por Kim, Yohan, Ponomarenko, Julia, Zhu, Zhanyang, Tamang, Dorjee, Wang, Peng, Greenbaum, Jason, Lundegaard, Claus, Sette, Alessandro, Lund, Ole, Bourne, Philip E., Nielsen, Morten, Peters, Bjoern
Publicado 2012

Predicting T cell recognition of MHC class I restricted neoepitopes

por Koşaloğlu-Yalçın, Zeynep, Lanka, Manasa, Frentzen, Angela, Logandha Ramamoorthy Premlal, Ashmitaa, Sidney, John, Vaughan, Kerrie, Greenbaum, Jason, Robbins, Paul, Gartner, Jared, Sette, Alessandro, Peters, Bjoern
Publicado 2018

Predicting the Success of Fmoc-Based Peptide Synthesis

por Gutman, Ilanit, Gutman, Ron, Sidney, John, Chihab, Leila, Mishto, Michele, Liepe, Juliane, Chiem, Anthony, Greenbaum, Jason, Yan, Zhen, Sette, Alessandro, Koşaloğlu-Yalçın, Zeynep, Peters, Bjoern
Publicado 2022

TLR9 Sensing of Self-DNA Controls Cell-Mediated Immunity to Listeria Infection via Rapid Conversion of Conventional CD4(+) T Cells to T(reg)

por Dolina, Joseph S., Lee, Joey, Griswold, Ryan Q., Labarta-Bajo, Lara, Kannan, Sumetha, Greenbaum, Jason A., El Idrissi, Nawal Bahia, Pont, Margot J., Croft, Michael, Schoenberger, Stephen P.
Publicado 2020

The immune epitope database (IEDB) 3.0

por Vita, Randi, Overton, James A., Greenbaum, Jason A., Ponomarenko, Julia, Clark, Jason D., Cantrell, Jason R., Wheeler, Daniel K., Gabbard, Joseph L., Hix, Deborah, Sette, Alessandro, Peters, Bjoern
Publicado 2014