Query enhancement through the practical application of ontology: the IEDB and OBI

por Vita, Randi, Overton, James A, Greenbaum, Jason A, Sette, Alessandro, Peters, Bjoern
Publicado 2013

Ontology Development for the Immune Epitope Database

por Greenbaum, Jason A., Vita, Randi, Zarebski, Laura M., Sette, Alessandro, Peters, Bjoern
Publicado 2009

Estimating tissue-specific peptide abundance from public RNA-Seq data

por Frentzen, Angela, Greenbaum, Jason A., Kim, Haeuk, Peters, Bjoern, Koşaloğlu-Yalçın, Zeynep
Publicado 2023

TiArA: A Virtual Appliance for the Analysis of Tiling Array Data

por Greenbaum, Jason A., Assarsson, Erika, Chung, Jo L., Head, Steven, Sette, Alessandro, Peters, Bjoern
Publicado 2010

Towards the prediction of non-peptidic epitopes

por Zierep, Paul F., Vita, Randi, Blazeska, Nina, Moumbock, Aurélien F. A., Greenbaum, Jason A., Peters, Bjoern, Günther, Stefan
Publicado 2022

The Immune Epitope Database 2.0

por Vita, Randi, Zarebski, Laura, Greenbaum, Jason A., Emami, Hussein, Hoof, Ilka, Salimi, Nima, Damle, Rohini, Sette, Alessandro, Peters, Bjoern
Publicado 2010

Properties of MHC Class I Presented Peptides That Enhance Immunogenicity

por Calis, Jorg J. A., Maybeno, Matt, Greenbaum, Jason A., Weiskopf, Daniela, De Silva, Aruna D., Sette, Alessandro, Keşmir, Can, Peters, Bjoern
Publicado 2013

A behind‐the‐scenes tour of the IEDB curation process: an optimized process empirically integrating automation and human curation efforts

por Salimi, Nima, Edwards, Lindy, Foos, Gabriele, Greenbaum, Jason A., Martini, Sheridan, Reardon, Brian, Shackelford, Deborah, Vita, Randi, Zalman, Leora, Peters, Bjoern, Sette, Alessandro
Publicado 2020

Developmentally distinct CD4(+) T(reg) lineages shape the CD8(+) T cell response to acute Listeria infection

por Dolina, Joseph S., Lee, Joey, Moore, Eugene L., Hope, Jennifer L., Gracias, Donald T., Matsutani, Takaji, Chawla, Ashu, Greenbaum, Jason A., Linden, Joel, Schoenberger, Stephen P.
Publicado 2022

TLR9 Sensing of Self-DNA Controls Cell-Mediated Immunity to Listeria Infection via Rapid Conversion of Conventional CD4(+) T Cells to T(reg)

por Dolina, Joseph S., Lee, Joey, Griswold, Ryan Q., Labarta-Bajo, Lara, Kannan, Sumetha, Greenbaum, Jason A., El Idrissi, Nawal Bahia, Pont, Margot J., Croft, Michael, Schoenberger, Stephen P.
Publicado 2020

The immune epitope database (IEDB) 3.0

por Vita, Randi, Overton, James A., Greenbaum, Jason A., Ponomarenko, Julia, Clark, Jason D., Cantrell, Jason R., Wheeler, Daniel K., Gabbard, Joseph L., Hix, Deborah, Sette, Alessandro, Peters, Bjoern
Publicado 2014

IEDB-AR: immune epitope database—analysis resource in 2019

por Dhanda, Sandeep Kumar, Mahajan, Swapnil, Paul, Sinu, Yan, Zhen, Kim, Haeuk, Jespersen, Martin Closter, Jurtz, Vanessa, Andreatta, Massimo, Greenbaum, Jason A, Marcatili, Paolo, Sette, Alessandro, Nielsen, Morten, Peters, Bjoern
Publicado 2019

IL-10 producing intestinal macrophages prevent excessive anti-bacterial innate immunity by limiting IL-23 synthesis

por Krause, Petra, Morris, Venetia, Greenbaum, Jason A., Park, Yoon, Bjoerheden, Unni, Mikulski, Zbigniew, Muffley, Tracy, Shui, Jr-Wen, Kim, Gisen, Cheroutre, Hilde, Liu, Yun- Cai, Peters, Bjoern, Kronenberg, Mitchell, Murai, Masako
Publicado 2015

TCRMatch: Predicting T-Cell Receptor Specificity Based on Sequence Similarity to Previously Characterized Receptors

por Chronister, William D., Crinklaw, Austin, Mahajan, Swapnil, Vita, Randi, Koşaloğlu-Yalçın, Zeynep, Yan, Zhen, Greenbaum, Jason A., Jessen, Leon E., Nielsen, Morten, Christley, Scott, Cowell, Lindsay G., Sette, Alessandro, Peters, Bjoern
Publicado 2021

Tumor cells fail to present MHC-II–restricted epitopes derived from oncogenes to CD4(+) T cells

por Brightman, Spencer E., Naradikian, Martin S., Thota, Rukman R., Becker, Angelica, Montero, Leslie, Bahmanof, Milad, Premlal, Ashmitaa Logandha Ramamoorthy, Greenbaum, Jason A., Peters, Bjoern, Cohen, Ezra E.W., Miller, Aaron M., Schoenberger, Stephen P.
Publicado 2023

Linked CD4(+)/CD8(+) T cell neoantigen vaccination overcomes immune checkpoint blockade resistance and enables tumor regression

por Dolina, Joseph S., Lee, Joey, Brightman, Spencer E., McArdle, Sara, Hall, Samantha M., Thota, Rukman R., Zavala, Karla S., Lanka, Manasa, Ramamoorthy Premlal, Ashmitaa Logandha, Greenbaum, Jason A., Cohen, Ezra E. W., Peters, Bjoern, Schoenberger, Stephen P.
Publicado 2023

Memory T Cells in Latent Mycobacterium tuberculosis Infection Are Directed against Three Antigenic Islands and Largely Contained in a CXCR3(+)CCR6(+) Th1 Subset

por Lindestam Arlehamn, Cecilia S., Gerasimova, Anna, Mele, Federico, Henderson, Ryan, Swann, Justine, Greenbaum, Jason A., Kim, Yohan, Sidney, John, James, Eddie A., Taplitz, Randy, McKinney, Denise M., Kwok, William W., Grey, Howard, Sallusto, Federica, Peters, Bjoern, Sette, Alessandro
Publicado 2013

A Multivalent and Cross-Protective Vaccine Strategy against Arenaviruses Associated with Human Disease

por Kotturi, Maya F., Botten, Jason, Sidney, John, Bui, Huynh-Hoa, Giancola, Lori, Maybeno, Matt, Babin, Josie, Oseroff, Carla, Pasquetto, Valerie, Greenbaum, Jason A., Peters, Bjoern, Ting, Joey, Do, Danh, Vang, Lo, Alexander, Jeff, Grey, Howard, Buchmeier, Michael J., Sette, Alessandro
Publicado 2009

Unique phenotypes and clonal expansions of human CD4 effector memory T cells re-expressing CD45RA

por Tian, Yuan, Babor, Mariana, Lane, Jerome, Schulten, Veronique, Patil, Veena S., Seumois, Grégory, Rosales, Sandy L., Fu, Zheng, Picarda, Gaelle, Burel, Julie, Zapardiel-Gonzalo, Jose, Tennekoon, Rashika N., De Silva, Aruna D., Premawansa, Sunil, Premawansa, Gayani, Wijewickrama, Ananda, Greenbaum, Jason A., Vijayanand, Pandurangan, Weiskopf, Daniela, Sette, Alessandro, Peters, Bjoern
Publicado 2017

Targets of T Cell Responses to SARS-CoV-2 Coronavirus in Humans with COVID-19 Disease and Unexposed Individuals

por Grifoni, Alba, Weiskopf, Daniela, Ramirez, Sydney I., Mateus, Jose, Dan, Jennifer M., Moderbacher, Carolyn Rydyznski, Rawlings, Stephen A., Sutherland, Aaron, Premkumar, Lakshmanane, Jadi, Ramesh S., Marrama, Daniel, de Silva, Aravinda M., Frazier, April, Carlin, Aaron F., Greenbaum, Jason A., Peters, Bjoern, Krammer, Florian, Smith, Davey M., Crotty, Shane, Sette, Alessandro
Publicado 2020