Prediction of protein-ligand interactions from paired protein sequence motifs and ligand substructures

por Greenside, Peyton, Hillenmeyer, Maureen, Kundaje, Anshul
Publicado 2018

Discovering epistatic feature interactions from neural network models of regulatory DNA sequences

por Greenside, Peyton, Shimko, Tyler, Fordyce, Polly, Kundaje, Anshul
Publicado 2018

Deciphering regulatory DNA sequences and noncoding genetic variants using neural network models of massively parallel reporter assays

por Movva, Rajiv, Greenside, Peyton, Marinov, Georgi K., Nair, Surag, Shrikumar, Avanti, Kundaje, Anshul
Publicado 2019

Evaluation of RNAi and CRISPR technologies by large-scale gene expression profiling in the Connectivity Map

por Smith, Ian, Greenside, Peyton G., Natoli, Ted, Lahr, David L., Wadden, David, Tirosh, Itay, Narayan, Rajiv, Root, David E., Golub, Todd R., Subramanian, Aravind, Doench, John G.
Publicado 2017

Lineage-specific and single cell chromatin accessibility charts human hematopoiesis and leukemia evolution

por Corces, M. Ryan, Buenrostro, Jason D., Wu, Beijing, Greenside, Peyton G., Chan, Steven M., Koenig, Julie L., Snyder, Michael P., Pritchard, Jonathan K., Kundaje, Anshul, Greenleaf, William J., Majeti, Ravindra, Chang, Howard Y.
Publicado 2016

Landscape of cohesin-mediated chromatin loops in the human genome

por Grubert, Fabian, Srivas, Rohith, Spacek, Damek  V, Kasowski, Maya, Ruiz-Velasco, Mariana, Sinnott-Armstrong, Nasa, Greenside, Peyton, Narasimha, Anil, Liu, Qing, Geller, Benjamin, Sanghi, Akshay, Kulik, Michael, Sa, Silin, Rabinovitch, Marlene, Kundaje, Anshul, Dalton, Stephen, Zaugg, Judith B., Snyder, Michael
Publicado 2020

Impact of regulatory variation across human iPSCs and differentiated cells

por Banovich, Nicholas E., Li, Yang I., Raj, Anil, Ward, Michelle C., Greenside, Peyton, Calderon, Diego, Tung, Po Yuan, Burnett, Jonathan E., Myrthil, Marsha, Thomas, Samantha M., Burrows, Courtney K., Romero, Irene Gallego, Pavlovic, Bryan J., Kundaje, Anshul, Pritchard, Jonathan K., Gilad, Yoav
Publicado 2018

Mitigation of off-target toxicity in CRISPR-Cas9 screens for essential non-coding elements

por Tycko, Josh, Wainberg, Michael, Marinov, Georgi K., Ursu, Oana, Hess, Gaelen T., Ego, Braeden K., Aradhana, Li, Amy, Truong, Alisa, Trevino, Alexandro E., Spees, Kaitlyn, Yao, David, Kaplow, Irene M., Greenside, Peyton G., Morgens, David W., Phanstiel, Douglas H., Snyder, Michael P., Bintu, Lacramioara, Greenleaf, William J., Kundaje, Anshul, Bassik, Michael C.
Publicado 2019

Enrichment of colorectal cancer associations in functional regions: Insight for using epigenomics data in the analysis of whole genome sequence-imputed GWAS data

por Bien, Stephanie A., Auer, Paul L., Harrison, Tabitha A., Qu, Conghui, Connolly, Charles M., Greenside, Peyton G., Chen, Sai, Berndt, Sonja I., Bézieau, Stéphane, Kang, Hyun M., Huyghe, Jeroen, Brenner, Hermann, Casey, Graham, Chan, Andrew T., Hopper, John L., Banbury, Barbara L., Chang-Claude, Jenny, Chanock, Stephen J., Haile, Robert W., Hoffmeister, Michael, Fuchsberger, Christian, Jenkins, Mark A., Leal, Suzanne M., Lemire, Mathieu, Newcomb, Polly A., Gallinger, Steven, Potter, John D., Schoen, Robert E., Slattery, Martha L., Smith, Joshua D., Le Marchand, Loic, White, Emily, Zanke, Brent W., Abeçasis, Goncalo R., Carlson, Christopher S., Peters, Ulrike, Nickerson, Deborah A., Kundaje, Anshul, Hsu, Li
Publicado 2017

Discovery of common and rare genetic risk variants for colorectal cancer

por Huyghe, Jeroen R, Bien, Stephanie A, Harrison, Tabitha A, Kang, Hyun Min, Chen, Sai, Schmit, Stephanie L, Conti, David V, Qu, Conghui, Jeon, Jihyoun, Edlund, Christopher K, Greenside, Peyton, Wainberg, Michael, Schumacher, Fredrick R, Smith, Joshua D, Levine, David M, Nelson, Sarah C, Sinnott-Armstrong, Nasa A, Albanes, Demetrius, Alonso, M Henar, Anderson, Kristin, Arnau-Collell, Coral, Arndt, Volker, Bamia, Christina, Banbury, Barbara L, Baron, John A, Berndt, Sonja I, Bézieau, Stéphane, Bishop, D Timothy, Boehm, Juergen, Boeing, Heiner, Brenner, Hermann, Brezina, Stefanie, Buch, Stephan, Buchanan, Daniel D, Burnett-Hartman, Andrea, Butterbach, Katja, Caan, Bette J, Campbell, Peter T, Carlson, Christopher S, Castellví-Bel, Sergi, Chan, Andrew T, Chang-Claude, Jenny, Chanock, Stephen J, Chirlaque, Maria-Dolores, Cho, Sang Hee, Connolly, Charles M, Cross, Amanda J, Cuk, Katarina, Curtis, Keith R, de la Chapelle, Albert, Doheny, Kimberly F, Duggan, David, Easton, Douglas F, Elias, Sjoerd G, Elliott, Faye, English, Dallas R, Feskens, Edith JM, Figueiredo, Jane C, Fischer, Rocky, FitzGerald, Liesel M, Forman, David, Gala, Manish, Gallinger, Steven, Gauderman, W James, Giles, Graham G, Gillanders, Elizabeth, Gong, Jian, Goodman, Phyllis J, Grady, William M, Grove, John S, Gsur, Andrea, Gunter, Marc J, Haile, Robert W, Hampe, Jochen, Hampel, Heather, Harlid, Sophia, Hayes, Richard B, Hofer, Philipp, Hoffmeister, Michael, Hopper, John L, Hsu, Wan-Ling, Huang, Wen-Yi, Hudson, Thomas J, Hunter, David J, Ibañez-Sanz, Gemma, Idos, Gregory E, Ingersoll, Roxann, Jackson, Rebecca D, Jacobs, Eric J, Jenkins, Mark A, Joshi, Amit D, Joshu, Corinne E, Keku, Temitope O, Key, Timothy J, Kim, Hyeong Rok, Kobayashi, Emiko, Kolonel, Laurence N, Kooperberg, Charles, Kühn, Tilman, Küry, Sébastien, Kweon, Sun-Seog, Larsson, Susanna C, Laurie, Cecelia A, Le Marchand, Loic, Leal, Suzanne M, Lee, Soo Chin, Lejbkowicz, Flavio, Lemire, Mathieu, Li, Christopher I, Li, Li, Lieb, Wolfgang, Lin, Yi, Lindblom, Annika, Lindor, Noralane M, Ling, Hua, Louie, Tin L, Männistö, Satu, Markowitz, Sanford D, Martín, Vicente, Masala, Giovanna, McNeil, Caroline E, Melas, Marilena, Milne, Roger L, Moreno, Lorena, Murphy, Neil, Myte, Robin, Naccarati, Alessio, Newcomb, Polly A, Offit, Kenneth, Ogino, Shuji, Onland-Moret, N Charlotte, Pardini, Barbara, Parfrey, Patrick S, Pearlman, Rachel, Perduca, Vittorio, Pharoah, Paul D P, Pinchev, Mila, Platz, Elizabeth A, Prentice, Ross L, Pugh, Elizabeth, Raskin, Leon, Rennert, Gad, Rennert, Hedy S, Riboli, Elio, Rodríguez-Barranco, Miguel, Romm, Jane, Sakoda, Lori C, Schafmayer, Clemens, Schoen, Robert E, Seminara, Daniela, Shah, Mitul, Shelford, Tameka, Shin, Min-Ho, Shulman, Katerina, Sieri, Sabina, Slattery, Martha L, Southey, Melissa C, Stadler, Zsofia K, Stegmaier, Christa, Su, Yu-Ru, Tangen, Catherine M, Thibodeau, Stephen N, Thomas, Duncan C, Thomas, Sushma S, Toland, Amanda E, Trichopoulou, Antonia, Ulrich, Cornelia M, Van Den Berg, David J, van Duijnhoven, Franzel JB, Van Guelpen, Bethany, van Kranen, Henk, Vijai, Joseph, Visvanathan, Kala, Vodicka, Pavel, Vodickova, Ludmila, Vymetalkova, Veronika, Weigl, Korbinian, Weinstein, Stephanie J, White, Emily, Win, Aung Ko, Wolf, C Roland, Wolk, Alicja, Woods, Michael O, Wu, Anna H, Zaidi, Syed H, Zanke, Brent W, Zhang, Qing, Zheng, Wei, Scacheri, Peter C, Potter, John D, Bassik, Michael C, Kundaje, Anshul, Casey, Graham, Moreno, Victor, Abecasis, Goncalo R, Nickerson, Deborah A, Gruber, Stephen B, Hsu, Li, Peters, Ulrike
Publicado 2018