Germline-mediated immunoediting sculpts breast cancer subtypes and metastatic proclivity

por Houlahan, Kathleen E., Khan, Aziz, Greenwald, Noah F, West, Robert B., Angelo, Michael, Curtis, Christina
Publicado 2023

Genomic profile of human meningioma cell lines

por Mei, Yu, Bi, Wenya Linda, Greenwald, Noah F., Agar, Nathalie Y., Beroukhim, Rameen, Dunn, Gavin P., Dunn, Ian F.
Publicado 2017

Osteoglycin promotes meningioma development through downregulation of NF2 and activation of mTOR signaling

por Mei, Yu, Du, Ziming, Hu, Changchen, Greenwald, Noah F., Abedalthagafi, Malak, Agar, Nathalie Y.R., Dunn, Gavin P., Bi, Wenya Linda, Santagata, Sandro, Dunn, Ian F.
Publicado 2017

Robust phenotyping of highly multiplexed tissue imaging data using pixel-level clustering

por Liu, Candace C., Greenwald, Noah F., Kong, Alex, McCaffrey, Erin F., Leow, Ke Xuan, Mrdjen, Dunja, Cannon, Bryan J., Rumberger, Josef Lorenz, Varra, Sricharan Reddy, Angelo, Michael
Publicado 2023

Patient-derived xenografts undergo murine-specific tumor evolution

por Ben-David, Uri, Ha, Gavin, Tseng, Yuen-Yi, Greenwald, Noah F., Oh, Coyin, Shih, Juliann, McFarland, James M., Wong, Bang, Boehm, Jesse S., Beroukhim, Rameen, Golub, Todd R.
Publicado 2017

SvABA: genome-wide detection of structural variants and indels by local assembly

por Wala, Jeremiah A., Bandopadhayay, Pratiti, Greenwald, Noah F., O'Rourke, Ryan, Sharpe, Ted, Stewart, Chip, Schumacher, Steve, Li, Yilong, Weischenfeldt, Joachim, Yao, Xiaotong, Nusbaum, Chad, Campbell, Peter, Getz, Gad, Meyerson, Matthew, Zhang, Cheng-Zhong, Imielinski, Marcin, Beroukhim, Rameen
Publicado 2018

Single-cell metabolic profiling of human cytotoxic T cells

por Hartmann, Felix J., Mrdjen, Dunja, McCaffrey, Erin, Glass, David R., Greenwald, Noah F., Bharadwaj, Anusha, Khair, Zumana, Verberk, Sanne G.S., Baranski, Alex, Baskar, Reema, Graf, William, Van Valen, David, den Bossche, Jan Van, Angelo, Michael, Bendall, Sean C.
Publicado 2020

Increased expression of programmed death ligand 1 (PD-L1) in human pituitary tumors

por Mei, Yu, Bi, Wenya Linda, Greenwald, Noah F., Du, Ziming, Agar, Nathalie Y. R., Kaiser, Ursula B., Woodmansee, Whitney W., Reardon, David A., Freeman, Gordon J., Fecci, Peter E., Laws, Edward R., Santagata, Sandro, Dunn, Gavin P., Dunn, Ian F.
Publicado 2016

MIBI-TOF: A multiplexed imaging platform relates cellular phenotypes and tissue structure

por Keren, Leeat, Bosse, Marc, Thompson, Steve, Risom, Tyler, Vijayaragavan, Kausalia, McCaffrey, Erin, Marquez, Diana, Angoshtari, Roshan, Greenwald, Noah F., Fienberg, Harris, Wang, Jennifer, Kambham, Neeraja, Kirkwood, David, Nolan, Garry, Montine, Thomas J., Galli, Stephen J., West, Robert, Bendall, Sean C., Angelo, Michael
Publicado 2019

Expanded vacuum-stable gels for multiplexed high-resolution spatial histopathology

por Bai, Yunhao, Zhu, Bokai, Oliveria, John-Paul, Cannon, Bryan J., Feyaerts, Dorien, Bosse, Marc, Vijayaragavan, Kausalia, Greenwald, Noah F., Phillips, Darci, Schürch, Christian M., Naik, Samuel M., Ganio, Edward A., Gaudilliere, Brice, Rodig, Scott J., Miller, Michael B., Angelo, Michael, Bendall, Sean C., Rovira-Clavé, Xavier, Nolan, Garry P., Jiang, Sizun
Publicado 2023

Spatial epitope barcoding reveals clonal tumor patch behaviors

por Rovira-Clavé, Xavier, Drainas, Alexandros P., Jiang, Sizun, Bai, Yunhao, Baron, Maya, Zhu, Bokai, Dallas, Alec E., Lee, Myung Chang, Chu, Theresa P., Holzem, Alessandra, Ayyagari, Ramya, Bhattacharya, Debadrita, McCaffrey, Erin F., Greenwald, Noah F., Markovic, Maxim, Coles, Garry L., Angelo, Michael, Bassik, Michael C., Sage, Julien, Nolan, Garry P.
Publicado 2022

A spatially resolved timeline of the human maternal–fetal interface

por Greenbaum, Shirley, Averbukh, Inna, Soon, Erin, Rizzuto, Gabrielle, Baranski, Alex, Greenwald, Noah F., Kagel, Adam, Bosse, Marc, Jaswa, Eleni G., Khair, Zumana, Kwok, Shirley, Warshawsky, Shiri, Piyadasa, Hadeesha, Goldston, Mako, Spence, Angie, Miller, Geneva, Schwartz, Morgan, Graf, Will, Van Valen, David, Winn, Virginia D., Hollmann, Travis, Keren, Leeat, van de Rijn, Matt, Angelo, Michael
Publicado 2023

Radiographic prediction of meningioma grade by semantic and radiomic features

por Coroller, Thibaud P., Bi, Wenya Linda, Huynh, Elizabeth, Abedalthagafi, Malak, Aizer, Ayal A., Greenwald, Noah F., Parmar, Chintan, Narayan, Vivek, Wu, Winona W., Miranda de Moura, Samuel, Gupta, Saksham, Beroukhim, Rameen, Wen, Patrick Y., Al-Mefty, Ossama, Dunn, Ian F., Santagata, Sandro, Alexander, Brian M., Huang, Raymond Y., Aerts, Hugo J. W. L.
Publicado 2017

Single-cell spatial proteomic imaging for human neuropathology

por Vijayaragavan, Kausalia, Cannon, Bryan J., Tebaykin, Dmitry, Bossé, Marc, Baranski, Alex, Oliveria, J. P., Bukhari, Syed A., Mrdjen, Dunja, Corces, M. Ryan, McCaffrey, Erin F., Greenwald, Noah F., Sigal, Yari, Marquez, Diana, Khair, Zumana, Bruce, Trevor, Goldston, Mako, Bharadwaj, Anusha, Montine, Kathleen S., Angelo, R. Michael, Montine, Thomas J., Bendall, Sean C.
Publicado 2022

Genomic landscape of high-grade meningiomas

por Bi, Wenya Linda, Greenwald, Noah F., Abedalthagafi, Malak, Wala, Jeremiah, Gibson, Will J., Agarwalla, Pankaj K., Horowitz, Peleg, Schumacher, Steven E., Esaulova, Ekaterina, Mei, Yu, Chevalier, Aaron, A. Ducar, Matthew, Thorner, Aaron R., van Hummelen, Paul, O. Stemmer-Rachamimov, Anat, Artyomov, Maksym, Al-Mefty, Ossama, Dunn, Gavin P., Santagata, Sandro, Dunn, Ian F., Beroukhim, Rameen
Publicado 2017

Erratum: Genomic landscape of high-grade meningiomas

por Bi, Wenya Linda, Greenwald, Noah F., Abedalthagafi, Malak, Wala, Jeremiah, Gibson, Will J., Agarwalla, Pankaj K., Horowitz, Peleg, Schumacher, Steven E., Esaulova, Ekaterina, Mei, Yu, Chevalier, Aaron, A. Ducar, Matthew, Thorner, Aaron R., van Hummelen, Paul, O. Stemmer-Rachamimov, Anat, Artyomov, Maksym, Al-Mefty, Ossama, Dunn, Gavin P., Santagata, Sandro, Dunn, Ian F., Beroukhim, Rameen
Publicado 2017

Transition to invasive breast cancer is associated with progressive changes in the structure and composition of tumor stroma

por Risom, Tyler, Glass, David R., Averbukh, Inna, Liu, Candace C., Baranski, Alex, Kagel, Adam, McCaffrey, Erin F., Greenwald, Noah F., Rivero-Gutiérrez, Belén, Strand, Siri H., Varma, Sushama, Kong, Alex, Keren, Leeat, Srivastava, Sucheta, Zhu, Chunfang, Khair, Zumana, Veis, Deborah J., Deschryver, Katherine, Vennam, Sujay, Maley, Carlo, Hwang, E. Shelley, Marks, Jeffrey R., Bendall, Sean C., Colditz, Graham A., West, Robert B., Angelo, Michael
Publicado 2022

Whole-cell segmentation of tissue images with human-level performance using large-scale data annotation and deep learning

por Greenwald, Noah F., Miller, Geneva, Moen, Erick, Kong, Alex, Kagel, Adam, Dougherty, Thomas, Fullaway, Christine Camacho, McIntosh, Brianna J., Leow, Ke Xuan, Schwartz, Morgan Sarah, Pavelchek, Cole, Cui, Sunny, Camplisson, Isabella, Bar-Tal, Omer, Singh, Jaiveer, Fong, Mara, Chaudhry, Gautam, Abraham, Zion, Moseley, Jackson, Warshawsky, Shiri, Soon, Erin, Greenbaum, Shirley, Risom, Tyler, Hollmann, Travis, Bendall, Sean C., Keren, Leeat, Graf, William, Angelo, Michael, Van Valen, David
Publicado 2022

The Society for Immunotherapy in Cancer statement on best practices for multiplex immunohistochemistry (IHC) and immunofluorescence (IF) staining and validation

por Taube, Janis M, Akturk, Guray, Angelo, Michael, Engle, Elizabeth L, Gnjatic, Sacha, Greenbaum, Shirley, Greenwald, Noah F, Hedvat, Cyrus V, Hollmann, Travis J, Juco, Jonathan, Parra, Edwin R, Rebelatto, Marlon C, Rimm, David L, Rodriguez-Canales, Jaime, Schalper, Kurt A, Stack, Edward C, Ferreira, Cláudia S, Korski, Konstanty, Lako, Ana, Rodig, Scott J, Schenck, Emanuel, Steele, Keith E, Surace, Michael J, Tetzlaff, Michael T, von Loga, Katharina, Wistuba, Ignacio I, Bifulco, Carlo B
Publicado 2020

The immunoregulatory landscape of human tuberculosis granulomas

por McCaffrey, Erin F., Donato, Michele, Keren, Leeat, Chen, Zhenghao, Delmastro, Alea, Fitzpatrick, Megan B., Gupta, Sanjana, Greenwald, Noah F., Baranski, Alex, Graf, William, Kumar, Rashmi, Bosse, Marc, Fullaway, Christine Camacho, Ramdial, Pratista K., Forgó, Erna, Jojic, Vladimir, Van Valen, David, Mehra, Smriti, Khader, Shabaana A., Bendall, Sean C., van de Rijn, Matt, Kalman, Daniel, Kaushal, Deepak, Hunter, Robert L., Banaei, Niaz, Steyn, Adrie J. C., Khatri, Purvesh, Angelo, Michael
Publicado 2022