MendeLIMS: a web-based laboratory information management system for clinical genome sequencing

por Grimes, Susan M, Ji, Hanlee P
Publicado 2014

The Cancer Genome Atlas Clinical Explorer: a web and mobile interface for identifying clinical–genomic driver associations

por Lee, HoJoon, Palm, Jennifer, Grimes, Susan M., Ji, Hanlee P.
Publicado 2015

Single-cell characterization of CRISPR-modified transcript isoforms with nanopore sequencing

por Kim, Heon Seok, Grimes, Susan M., Hooker, Anna C., Lau, Billy T., Ji, Hanlee P.
Publicado 2021

A programmable method for massively parallel targeted sequencing

por Hopmans, Erik S., Natsoulis, Georges, Bell, John M., Grimes, Susan M., Sieh, Weiva, Ji, Hanlee P.
Publicado 2014

KmerKeys: a web resource for searching indexed genome assemblies and variants

por Pavlichin, Dmitri S, Lee, HoJoon, Greer, Stephanie U, Grimes, Susan M, Weissman, Tsachy, Ji, Hanlee P
Publicado 2022

CRISPR–Cas9-targeted fragmentation and selective sequencing enable massively parallel microsatellite analysis

por Shin, GiWon, Grimes, Susan M., Lee, HoJoon, Lau, Billy T., Xia, Li C., Ji, Hanlee P.
Publicado 2017

Single-cell transcriptome analysis identifies distinct cell types and niche signaling in a primary gastric organoid model

por Chen, Jiamin, Lau, Billy T., Andor, Noemi, Grimes, Susan M., Handy, Christine, Wood-Bouwens, Christina, Ji, Hanlee P.
Publicado 2019

Characterization of the consensus mucosal microbiome of colorectal cancer

por Zhao, Lan, Grimes, Susan M, Greer, Stephanie U, Kubit, Matthew, Lee, HoJoon, Nadauld, Lincoln D, Ji, Hanlee P
Publicado 2021

GITR and TIGIT immunotherapy provokes divergent multi-cellular responses in the tumor microenvironment of gastrointestinal cancers

por Sathe, Anuja, Ayala, Carlos, Bai, Xiangqi, Grimes, Susan M., Lee, Byrne, Kin, Cindy, Shelton, Andrew, Poultsides, George, Ji, Hanlee P.
Publicado 2023

GITR and TIGIT immunotherapy provokes divergent multicellular responses in the tumor microenvironment of gastrointestinal cancers

por Sathe, Anuja, Ayala, Carlos, Bai, Xiangqi, Grimes, Susan M., Lee, Byrne, Kin, Cindy, Shelton, Andrew, Poultsides, George, Ji, Hanlee P.
Publicado 2023

A genome-wide approach for detecting novel insertion-deletion variants of mid-range size

por Xia, Li C., Sakshuwong, Sukolsak, Hopmans, Erik S., Bell, John M., Grimes, Susan M., Siegmund, David O., Ji, Hanlee P., Zhang, Nancy R.
Publicado 2016

Single cell and spatial alternative splicing analysis with long read sequencing

por Fu, Yuntian, Kim, Heonseok, Adams, Jenea I., Grimes, Susan M., Huang, Sijia, Lau, Billy T., Sathe, Anuja, Hess, Paul, Ji, Hanlee P., Zhang, Nancy R.
Publicado 2023

A Flexible Approach for Highly Multiplexed Candidate Gene Targeted Resequencing

por Natsoulis, Georges, Bell, John M., Xu, Hua, Buenrostro, Jason D., Ordonez, Heather, Grimes, Susan, Newburger, Daniel, Jensen, Michael, Zahn, Jacob M., Zhang, Nancy, Ji, Hanlee P.
Publicado 2011

Single-molecule methylation profiles of cell-free DNA in cancer with nanopore sequencing

por Lau, Billy T., Almeda, Alison, Schauer, Marie, McNamara, Madeline, Bai, Xiangqi, Meng, Qingxi, Partha, Mira, Grimes, Susan M., Lee, HoJoon, Heestand, Gregory M., Ji, Hanlee P.
Publicado 2023

Emergence of Hemagglutinin Mutations During the Course of Influenza Infection

por Cushing, Anna, Kamali, Amanda, Winters, Mark, Hopmans, Erik S., Bell, John M., Grimes, Susan M., Xia, Li C., Zhang, Nancy R., Moss, Ronald B., Holodniy, Mark, Ji, Hanlee P.
Publicado 2015

Joint single cell DNA-seq and RNA-seq of gastric cancer cell lines reveals rules of in vitro evolution

por Andor, Noemi, Lau, Billy T, Catalanotti, Claudia, Sathe, Anuja, Kubit, Matthew, Chen, Jiamin, Blaj, Cristina, Cherry, Athena, Bangs, Charles D, Grimes, Susan M, Suarez, Carlos J, Ji, Hanlee P
Publicado 2020

Profiling diverse sequence tandem repeats in colorectal cancer reveals co-occurrence of microsatellite and chromosomal instability involving Chromosome 8

por Shin, GiWon, Greer, Stephanie U., Hopmans, Erik, Grimes, Susan M., Lee, HoJoon, Zhao, Lan, Miotke, Laura, Suarez, Carlos, Almeda, Alison F., Haraldsdottir, Sigurdis, Ji, Hanlee P.
Publicado 2021

Single-cell multi-gene identification of somatic mutations and gene rearrangements in cancer

por Grimes, Susan M, Kim, Heon Seok, Roy, Sharmili, Sathe, Anuja, Ayala, Carlos I, Bai, Xiangqi, Almeda-Notestine, Alison F, Haebe, Sarah, Shree, Tanaya, Levy, Ronald, Lau, Billy T, Ji, Hanlee P
Publicado 2023

A robust targeted sequencing approach for low input and variable quality DNA from clinical samples

por So, Austin P., Vilborg, Anna, Bouhlal, Yosr, Koehler, Ryan T., Grimes, Susan M., Pouliot, Yannick, Mendoza, Daniel, Ziegle, Janet, Stein, Jason, Goodsaid, Federico, Lucero, Michael Y., De La Vega, Francisco M., Ji, Hanlee P.
Publicado 2018

Colorectal Cancer Metastases in the Liver Establish Immunosuppressive Spatial Networking between Tumor-Associated SPP1(+) Macrophages and Fibroblasts

por Sathe, Anuja, Mason, Kaishu, Grimes, Susan M., Zhou, Zilu, Lau, Billy T., Bai, Xiangqi, Su, Andrew, Tan, Xiao, Lee, HoJoon, Suarez, Carlos J., Nguyen, Quan, Poultsides, George, Zhang, Nancy R., Ji, Hanlee P.
Publicado 2023