Investigating the Human Host—ssRNA Virus Interaction Landscape Using the SMEAGOL Toolbox

por Lal, Avantika, Galvao Ferrarini, Mariana, Gruber, Andreas J.
Publicado 2022

Terminal exon characterization with TECtool reveals an abundance of cell-specific isoforms

por Gruber, Andreas J., Gypas, Foivos, Riba, Andrea, Schmidt, Ralf, Zavolan, Mihaela
Publicado 2018

3' End Sequencing Library Preparation with A-seq2

por Martin, Georges, Schmidt, Ralf, Gruber, Andreas J., Ghosh, Souvik, Keller, Walter, Zavolan, Mihaela
Publicado 2017

Comparative assessment of methods for the computational inference of transcript isoform abundance from RNA-seq data

por Kanitz, Alexander, Gypas, Foivos, Gruber, Andreas J., Gruber, Andreas R., Martin, Georges, Zavolan, Mihaela
Publicado 2015

PolyASite 2.0: a consolidated atlas of polyadenylation sites from 3′ end sequencing

por Herrmann, Christina J, Schmidt, Ralf, Kanitz, Alexander, Artimo, Panu, Gruber, Andreas J, Zavolan, Mihaela
Publicado 2020

ISMARA: automated modeling of genomic signals as a democracy of regulatory motifs

por Balwierz, Piotr J., Pachkov, Mikhail, Arnold, Phil, Gruber, Andreas J., Zavolan, Mihaela, van Nimwegen, Erik
Publicado 2014

Discovery of physiological and cancer-related regulators of 3′ UTR processing with KAPAC

por Gruber, Andreas J., Schmidt, Ralf, Ghosh, Souvik, Martin, Georges, Gruber, Andreas R., van Nimwegen, Erik, Zavolan, Mihaela
Publicado 2018

A comprehensive analysis of 3′ end sequencing data sets reveals novel polyadenylation signals and the repressive role of heterogeneous ribonucleoprotein C on cleavage and polyadeny...

por Gruber, Andreas J., Schmidt, Ralf, Gruber, Andreas R., Martin, Georges, Ghosh, Souvik, Belmadani, Manuel, Keller, Walter, Zavolan, Mihaela
Publicado 2016

TFAP2A is a component of the ZEB1/2 network that regulates TGFB1-induced epithelial to mesenchymal transition

por Dimitrova, Yoana, Gruber, Andreas J., Mittal, Nitish, Ghosh, Souvik, Dimitriades, Beatrice, Mathow, Daniel, Grandy, William Aaron, Christofori, Gerhard, Zavolan, Mihaela
Publicado 2017

Embryonic stem cell-specific microRNAs contribute to pluripotency by inhibiting regulators of multiple differentiation pathways

por Gruber, Andreas J., Grandy, William A., Balwierz, Piotr J., Dimitrova, Yoana A., Pachkov, Mikhail, Ciaudo, Constance, van Nimwegen, Erik, Zavolan, Mihaela
Publicado 2014

Single‐cell mRNA profiling reveals the hierarchical response of miRNA targets to miRNA induction

por Rzepiela, Andrzej J, Ghosh, Souvik, Breda, Jeremie, Vina‐Vilaseca, Arnau, Syed, Afzal P, Gruber, Andreas J, Eschbach, Katja, Beisel, Christian, van Nimwegen, Erik, Zavolan, Mihaela
Publicado 2018

Genome-wide bioinformatic analyses predict key host and viral factors in SARS-CoV-2 pathogenesis

por Ferrarini, Mariana G., Lal, Avantika, Rebollo, Rita, Gruber, Andreas J., Guarracino, Andrea, Gonzalez, Itziar Martinez, Floyd, Taylor, de Oliveira, Daniel Siqueira, Shanklin, Justin, Beausoleil, Ethan, Pusa, Taneli, Pickett, Brett E., Aguiar-Pulido, Vanessa
Publicado 2021

The International Virus Bioinformatics Meeting 2022

por Hufsky, Franziska, Beslic, Denis, Boeckaerts, Dimitri, Duchene, Sebastian, González-Tortuero, Enrique, Gruber, Andreas J., Guo, Jiarong, Jansen, Daan, Juma, John, Kongkitimanon, Kunaphas, Luque, Antoni, Ritsch, Muriel, Lencioni Lovate, Gabriel, Nishimura, Luca, Pas, Célia, Domingo, Esteban, Hodcroft, Emma, Lemey, Philippe, Sullivan, Matthew B., Weber, Friedemann, González-Candelas, Fernando, Krautwurst, Sarah, Pérez-Cataluña, Alba, Randazzo, Walter, Sánchez, Gloria, Marz, Manja
Publicado 2022

Whole-genome analysis of Nigerian patients with breast cancer reveals ethnic-driven somatic evolution and distinct genomic subtypes

por Ansari-Pour, Naser, Zheng, Yonglan, Yoshimatsu, Toshio F., Sanni, Ayodele, Ajani, Mustapha, Reynier, Jean-Baptiste, Tapinos, Avraam, Pitt, Jason J., Dentro, Stefan, Woodard, Anna, Rajagopal, Padma Sheila, Fitzgerald, Dominic, Gruber, Andreas J., Odetunde, Abayomi, Popoola, Abiodun, Falusi, Adeyinka G., Babalola, Chinedum Peace, Ogundiran, Temidayo, Ibrahim, Nasiru, Barretina, Jordi, Van Loo, Peter, Chen, Mengjie, White, Kevin P., Ojengbede, Oladosu, Obafunwa, John, Huo, Dezheng, Wedge, David C., Olopade, Olufunmilayo I.
Publicado 2021

Uncovering novel mutational signatures by de novo extraction with SigProfilerExtractor

por Islam, S.M. Ashiqul, Díaz-Gay, Marcos, Wu, Yang, Barnes, Mark, Vangara, Raviteja, Bergstrom, Erik N., He, Yudou, Vella, Mike, Wang, Jingwei, Teague, Jon W., Clapham, Peter, Moody, Sarah, Senkin, Sergey, Li, Yun Rose, Riva, Laura, Zhang, Tongwu, Gruber, Andreas J., Steele, Christopher D., Otlu, Burçak, Khandekar, Azhar, Abbasi, Ammal, Humphreys, Laura, Syulyukina, Natalia, Brady, Samuel W., Alexandrov, Boian S., Pillay, Nischalan, Zhang, Jinghui, Adams, David J., Martincorena, Iñigo, Wedge, David C., Landi, Maria Teresa, Brennan, Paul, Stratton, Michael R., Rozen, Steven G., Alexandrov, Ludmil B.
Publicado 2022

Differential transcriptional responses to Ebola and Marburg virus infection in bat and human cells

por Hölzer, Martin, Krähling, Verena, Amman, Fabian, Barth, Emanuel, Bernhart, Stephan H., Carmelo, Victor A. O., Collatz, Maximilian, Doose, Gero, Eggenhofer, Florian, Ewald, Jan, Fallmann, Jörg, Feldhahn, Lasse M., Fricke, Markus, Gebauer, Juliane, Gruber, Andreas J., Hufsky, Franziska, Indrischek, Henrike, Kanton, Sabina, Linde, Jörg, Mostajo, Nelly, Ochsenreiter, Roman, Riege, Konstantin, Rivarola-Duarte, Lorena, Sahyoun, Abdullah H., Saunders, Sita J., Seemann, Stefan E., Tanzer, Andrea, Vogel, Bertram, Wehner, Stefanie, Wolfinger, Michael T., Backofen, Rolf, Gorodkin, Jan, Grosse, Ivo, Hofacker, Ivo, Hoffmann, Steve, Kaleta, Christoph, Stadler, Peter F., Becker, Stephan, Marz, Manja
Publicado 2016

Corrigendum: Differential transcriptional responses to Ebola and Marburg virus infection in bat and human cells

por Hölzer, Martin, Krähling, Verena, Amman, Fabian, Barth, Emanuel, Bernhart, Stephan H., Carmelo, Victor A. O., Collatz, Maximilian, Doose, Gero, Eggenhofer, Florian, Ewald, Jan, Fallmann, Jörg, Feldhahn, Lasse M., Fricke, Markus, Gebauer, Juliane, Gruber, Andreas J., Hufsky, Franziska, Indrischek, Henrike, Kanton, Sabina, Linde, Jörg, Mostajo, Nelly, Ochsenreiter, Roman, Riege, Konstantin, Rivarola-Duarte, Lorena, Sahyoun, Abdullah H., Saunders, Sita J., Seemann, Stefan E., Tanzer, Andrea, Vogel, Bertram, Wehner, Stefanie, Wolfinger, Michael T., Backofen, Rolf, Gorodkin, Jan, Grosse, Ivo, Hofacker, Ivo, Hoffmann, Steve, Kaleta, Christoph, Stadler, Peter F., Becker, Stephan, Marz, Manja
Publicado 2017

Germline MBD4 deficiency causes a multi-tumor predisposition syndrome

por Palles, Claire, West, Hannah D., Chew, Edward, Galavotti, Sara, Flensburg, Christoffer, Grolleman, Judith E., Jansen, Erik A.M., Curley, Helen, Chegwidden, Laura, Arbe-Barnes, Edward H., Lander, Nicola, Truscott, Rebekah, Pagan, Judith, Bajel, Ashish, Sherwood, Kitty, Martin, Lynn, Thomas, Huw, Georgiou, Demetra, Fostira, Florentia, Goldberg, Yael, Adams, David J., van der Biezen, Simone A.M., Christie, Michael, Clendenning, Mark, Thomas, Laura E., Deltas, Constantinos, Dimovski, Aleksandar J., Dymerska, Dagmara, Lubinski, Jan, Mahmood, Khalid, van der Post, Rachel S., Sanders, Mathijs, Weitz, Jürgen, Taylor, Jenny C., Turnbull, Clare, Vreede, Lilian, van Wezel, Tom, Whalley, Celina, Arnedo-Pac, Claudia, Caravagna, Giulio, Cross, William, Chubb, Daniel, Frangou, Anna, Gruber, Andreas J., Kinnersley, Ben, Noyvert, Boris, Church, David, Graham, Trevor, Houlston, Richard, Lopez-Bigas, Nuria, Sottoriva, Andrea, Wedge, David, Jenkins, Mark A., Kuiper, Roland P., Roberts, Andrew W., Cheadle, Jeremy P., Ligtenberg, Marjolijn J.L., Hoogerbrugge, Nicoline, Koelzer, Viktor H., Rivas, Andres Dacal, Winship, Ingrid M., Ponte, Clara Ruiz, Buchanan, Daniel D., Power, Derek G., Green, Andrew, Tomlinson, Ian P.M., Sampson, Julian R., Majewski, Ian J., de Voer, Richarda M.
Publicado 2022