Combining signal and sequence to detect RNA polymerase initiation in ATAC-seq data

por Tripodi, Ignacio J., Chowdhury, Murad, Gruca, Margaret, Dowell, Robin D.
Publicado 2020

The Δ40p53 isoform inhibits p53-dependent eRNA transcription and enables regulation by signal-specific transcription factors during p53 activation

por Levandowski, Cecilia B., Jones, Taylor, Gruca, Margaret, Ramamoorthy, Sivapriya, Dowell, Robin D., Taatjes, Dylan J.
Publicado 2021

Deconvolution of multiplexed transcriptional responses to wood smoke particles defines rapid aryl hydrocarbon receptor signaling dynamics

por Gupta, Arnav, Sasse, Sarah K., Gruca, Margaret A., Sanford, Lynn, Dowell, Robin D., Gerber, Anthony N.
Publicado 2021

Nascent transcript analysis of glucocorticoid crosstalk with TNF defines primary and cooperative inflammatory repression

por Sasse, Sarah K., Gruca, Margaret, Allen, Mary A., Kadiyala, Vineela, Song, Tengyao, Gally, Fabienne, Gupta, Arnav, Pufall, Miles A., Dowell, Robin D., Gerber, Anthony N.
Publicado 2019

The MUC5B-associated variant rs35705950 resides within an enhancer subject to lineage- and disease-dependent epigenetic remodeling

por Gally, Fabienne, Sasse, Sarah K., Kurche, Jonathan S., Gruca, Margaret A., Cardwell, Jonathan H., Okamoto, Tsukasa, Chu, Hong W., Hou, Xiaomeng, Poirion, Olivier B., Buchanan, Justin, Preissl, Sebastian, Ren, Bing, Colgan, Sean P., Dowell, Robin D., Yang, Ivana V., Schwartz, David A., Gerber, Anthony N.
Publicado 2021