Gene Expression Prediction by Soft Integration and the Elastic Net—Best Performance of the DREAM3 Gene Expression Challenge

por Gustafsson, Mika, Hörnquist, Michael
Publicado 2010

LiPLike: towards gene regulatory network predictions of high certainty

por Magnusson, Rasmus, Gustafsson, Mika
Publicado 2020

Deep neural network prediction of genome-wide transcriptome signatures – beyond the Black-box

por Magnusson, Rasmus, Tegnér, Jesper N., Gustafsson, Mika
Publicado 2022

Identification of DNA methylation patterns predisposing for an efficient response to BCG vaccination in healthy BCG-naïve subjects

por Das, Jyotirmoy, Verma, Deepti, Gustafsson, Mika, Lerm, Maria
Publicado 2019

Using high-throughput multi-omics data to investigate structural balance in elementary gene regulatory network motifs

por Zenere, Alberto, Rundquist, Olof, Gustafsson, Mika, Altafini, Claudio
Publicado 2021

Multi-omics protein-coding units as massively parallel Bayesian networks: Empirical validation of causality structure

por Zenere, Alberto, Rundquist, Olof, Gustafsson, Mika, Altafini, Claudio
Publicado 2022

Deriving disease modules from the compressed transcriptional space embedded in a deep autoencoder

por Dwivedi, Sanjiv K., Tjärnberg, Andreas, Tegnér, Jesper, Gustafsson, Mika
Publicado 2020

ComHub: Community predictions of hubs in gene regulatory networks

por Åkesson, Julia, Lubovac-Pilav, Zelmina, Magnusson, Rasmus, Gustafsson, Mika
Publicado 2021

NCAE: data-driven representations using a deep network-coherent DNA methylation autoencoder identify robust disease and risk factor signatures

por Martínez-Enguita, David, Dwivedi, Sanjiv K, Jörnsten, Rebecka, Gustafsson, Mika
Publicado 2023

Cross-talks via mTORC2 can explain enhanced activation in response to insulin in diabetic patients

por Magnusson, Rasmus, Gustafsson, Mika, Cedersund, Gunnar, Strålfors, Peter, Nyman, Elin
Publicado 2017

Combined Multivariate and Pathway Analyses Show That Allergen-Induced Gene Expression Changes in CD4(+) T Cells Are Reversed by Glucocorticoids

por Zhao, Yelin, Wang, Hui, Gustafsson, Mika, Muraro, Antonella, Bruhn, Sören, Benson, Mikael
Publicado 2012

Facing the challenges of multiscale modelling of bacterial and fungal pathogen–host interactions

por Schleicher, Jana, Conrad, Theresia, Gustafsson, Mika, Cedersund, Gunnar, Guthke, Reinhard, Linde, Jörg
Publicado 2017

Progesterone Inhibits the Establishment of Activation-Associated Chromatin During T(H)1 Differentiation

por Rundquist, Olof, Nestor, Colm E., Jenmalm, Maria C., Hellberg, Sandra, Gustafsson, Mika
Publicado 2022

MODalyseR—a novel software for inference of disease module hub regulators identified a putative multiple sclerosis regulator supported by independent eQTL data

por de Weerd, Hendrik A, Åkesson, Julia, Guala, Dimitri, Gustafsson, Mika, Lubovac-Pilav, Zelmina
Publicado 2022

A comprehensive mechanistic model of adipocyte signaling with layers of confidence

por Lövfors, William, Magnusson, Rasmus, Jönsson, Cecilia, Gustafsson, Mika, Olofsson, Charlotta S., Cedersund, Gunnar, Nyman, Elin
Publicado 2023

ModuleDiscoverer: Identification of regulatory modules in protein-protein interaction networks

por Vlaic, Sebastian, Conrad, Theresia, Tokarski-Schnelle, Christian, Gustafsson, Mika, Dahmen, Uta, Guthke, Reinhard, Schuster, Stefan
Publicado 2018

Progesterone Dampens Immune Responses in In Vitro Activated CD4(+) T Cells and Affects Genes Associated With Autoimmune Diseases That Improve During Pregnancy

por Hellberg, Sandra, Raffetseder, Johanna, Rundquist, Olof, Magnusson, Rasmus, Papapavlou, Georgia, Jenmalm, Maria C., Ernerudh, Jan, Gustafsson, Mika
Publicado 2021

Hybrid modelling for stroke care: Review and suggestions of new approaches for risk assessment and simulation of scenarios

por Herrgårdh, Tilda, Madai, Vince I., Kelleher, John D., Magnusson, Rasmus, Gustafsson, Mika, Milani, Lili, Gennemark, Peter, Cedersund, Gunnar
Publicado 2021

Combined prenatal Lactobacillus reuteri and ω-3 supplementation synergistically modulates DNA methylation in neonatal T helper cells

por Huoman, Johanna, Martínez-Enguita, David, Olsson, Elin, Ernerudh, Jan, Nilsson, Lennart, Duchén, Karel, Gustafsson, Mika, Jenmalm, Maria C.
Publicado 2021

TET2 as a tumor suppressor and therapeutic target in T-cell acute lymphoblastic leukemia

por Bensberg, Maike, Rundquist, Olof, Selimović, Aida, Lagerwall, Cathrine, Benson, Mikael, Gustafsson, Mika, Vogt, Hartmut, Lentini, Antonio, Nestor, Colm E.
Publicado 2021