POIBM: batch correction of heterogeneous RNA-seq datasets through latent sample matching

por Holmström, Susanna, Hautaniemi, Sampsa, Häkkinen, Antti
Publicado 2022

Detecting sequence dependent transcriptional pauses from RNA and protein number time series

por Emmert-Streib, Frank, Häkkinen, Antti, Ribeiro, Andre S
Publicado 2012

Simultaneous adsorption of Cu(II), Zn(II), Cd(II) and Pb(II) from synthetic wastewater using NaP and LTA zeolites prepared from biomass fly ash

por Küçük, Mehmet Emin, Makarava, Iryna, Kinnarinen, Teemu, Häkkinen, Antti
Publicado 2023

Effects of Rate-Limiting Steps in Transcription Initiation on Genetic Filter Motifs

por Häkkinen, Antti, Tran, Huy, Yli-Harja, Olli, Ribeiro, Andre S.
Publicado 2013

Effects of Transcriptional Pausing on Gene Expression Dynamics

por Rajala, Tiina, Häkkinen, Antti, Healy, Shannon, Yli-Harja, Olli, Ribeiro, Andre S.
Publicado 2010

Effects of multimerization on the temporal variability of protein complex abundance

por Häkkinen, Antti, Tran, Huy, Yli-Harja, Olli, Ingalls, Brian, Ribeiro, Andre S
Publicado 2013

Temperature-Dependent Model of Multi-step Transcription Initiation in Escherichia coli Based on Live Single-Cell Measurements

por Oliveira, Samuel M. D., Häkkinen, Antti, Lloyd-Price, Jason, Tran, Huy, Kandavalli, Vinodh, Ribeiro, Andre S.
Publicado 2016

Cardiovascular disease in people born to unmarried mothers in two historical periods: The Helsinki Birth Cohort Study 1934–1944

por Mikkonen, H. Maiju, Salonen, Minna K., Häkkinen, Antti, Osmond, Clive, Eriksson, Johan G., Kajantie, Eero
Publicado 2021

In vivo kinetics of transcription initiation of the lar promoter in Escherichia coli. Evidence for a sequential mechanism with two rate-limiting steps

por Kandhavelu, Meenakshisundaram, Mannerström, Henrik, Gupta, Abhishekh, Häkkinen, Antti, Lloyd-Price, Jason, Yli-Harja, Olli, Ribeiro, Andre S
Publicado 2011

Differential DNA methylation in recovery from shift work disorder

por Lahtinen, Alexandra, Häkkinen, Antti, Puttonen, Sampsa, Vanttola, Päivi, Viitasalo, Katriina, Porkka-Heiskanen, Tarja, Härmä, Mikko, Paunio, Tiina
Publicado 2021

Dissecting the stochastic transcription initiation process in live Escherichia coli

por Lloyd-Price, Jason, Startceva, Sofia, Kandavalli, Vinodh, Chandraseelan, Jerome G., Goncalves, Nadia, Oliveira, Samuel M. D., Häkkinen, Antti, Ribeiro, Andre S.
Publicado 2016

The lifelong socioeconomic disadvantage of single-mother background - the Helsinki Birth Cohort study 1934–1944

por Mikkonen, H. Maiju, Salonen, Minna K., Häkkinen, Antti, Olkkola, Maarit, Pesonen, Anu-Katriina, Räikkönen, Katri, Osmond, Clive, Eriksson, Johan G., Kajantie, Eero
Publicado 2016

QuantISH: RNA in situ hybridization image analysis framework for quantifying cell type-specific target RNA expression and variability

por Jamalzadeh, Sanaz, Häkkinen, Antti, Andersson, Noora, Huhtinen, Kaisa, Laury, Anna, Hietanen, Sakari, Hynninen, Johanna, Oikkonen, Jaana, Carpén, Olli, Virtanen, Anni, Hautaniemi, Sampsa
Publicado 2022

qSNE: quadratic rate t-SNE optimizer with automatic parameter tuning for large datasets

por Häkkinen, Antti, Koiranen, Juha, Casado, Julia, Kaipio, Katja, Lehtonen, Oskari, Petrucci, Eleonora, Hynninen, Johanna, Hietanen, Sakari, Carpén, Olli, Pasquini, Luca, Biffoni, Mauro, Lehtonen, Rainer, Hautaniemi, Sampsa
Publicado 2020

Agile workflow for interactive analysis of mass cytometry data

por Casado, Julia, Lehtonen, Oskari, Rantanen, Ville, Kaipio, Katja, Pasquini, Luca, Häkkinen, Antti, Petrucci, Elenora, Hynninen, Johanna, Hietanen, Sakari, Carpén, Olli, Biffoni, Mauro, Färkkilä, Anniina, Hautaniemi, Sampsa
Publicado 2020

PRISM: recovering cell-type-specific expression profiles from individual composite RNA-seq samples

por Häkkinen, Antti, Zhang, Kaiyang, Alkodsi, Amjad, Andersson, Noora, Erkan, Erdogan Pekcan, Dai, Jun, Kaipio, Katja, Lamminen, Tarja, Mansuri, Naziha, Huhtinen, Kaisa, Vähärautio, Anna, Carpén, Olli, Hynninen, Johanna, Hietanen, Sakari, Lehtonen, Rainer, Hautaniemi, Sampsa
Publicado 2021

Longitudinal single-cell RNA-seq analysis reveals stress-promoted chemoresistance in metastatic ovarian cancer

por Zhang, Kaiyang, Erkan, Erdogan Pekcan, Jamalzadeh, Sanaz, Dai, Jun, Andersson, Noora, Kaipio, Katja, Lamminen, Tarja, Mansuri, Naziha, Huhtinen, Kaisa, Carpén, Olli, Hietanen, Sakari, Oikkonen, Jaana, Hynninen, Johanna, Virtanen, Anni, Häkkinen, Antti, Hautaniemi, Sampsa, Vähärautio, Anna
Publicado 2022

Network-guided identification of cancer-selective combinatorial therapies in ovarian cancer

por He, Liye, Bulanova, Daria, Oikkonen, Jaana, Häkkinen, Antti, Zhang, Kaiyang, Zheng, Shuyu, Wang, Wenyu, Erkan, Erdogan Pekcan, Carpén, Olli, Joutsiniemi, Titta, Hietanen, Sakari, Hynninen, Johanna, Huhtinen, Kaisa, Hautaniemi, Sampsa, Vähärautio, Anna, Tang, Jing, Wennerberg, Krister, Aittokallio, Tero
Publicado 2021

The transcription factor network of E. coli steers global responses to shifts in RNAP concentration

por L.B. Almeida, Bilena, M. Bahrudeen, Mohamed N, Chauhan, Vatsala, Dash, Suchintak, Kandavalli, Vinodh, Häkkinen, Antti, Lloyd-Price, Jason, S.D. Cristina, Palma, Baptista, Ines S C, Gupta, Abhishekh, Kesseli, Juha, Dufour, Eric, Smolander, Olli-Pekka, Nykter, Matti, Auvinen, Petri, Jacobs, Howard T, M.D. Oliveira, Samuel, S. Ribeiro, Andre
Publicado 2022