Gramtools enables multiscale variation analysis with genome graphs

por Letcher, Brice, Hunt, Martin, Iqbal, Zamin
Publicado 2021

Inferring synteny between genome assemblies: a systematic evaluation

por Liu, Dang, Hunt, Martin, Tsai, Isheng J
Publicado 2018

A comprehensive evaluation of assembly scaffolding tools

por Hunt, Martin, Newbold, Chris, Berriman, Matthew, Otto, Thomas D
Publicado 2014

Sim2Ls: FAIR simulation workflows and data

por Hunt, Martin, Clark, Steven, Mejia, Daniel, Desai, Saaketh, Strachan, Alejandro
Publicado 2022

ReadItAndKeep: rapid decontamination of SARS-CoV-2 sequencing reads

por Hunt, Martin, Swann, Jeremy, Constantinides, Bede, Fowler, Philip W, Iqbal, Zamin
Publicado 2022

REAPR: a universal tool for genome assembly evaluation

por Hunt, Martin, Kikuchi, Taisei, Sanders, Mandy, Newbold, Chris, Berriman, Matthew, Otto, Thomas D
Publicado 2013

Summarizing Specific Profiles in Illumina Sequencing from Whole-Genome Amplified DNA

por Tsai, Isheng J., Hunt, Martin, Holroyd, Nancy, Huckvale, Thomas, Berriman, Matthew, Kikuchi, Taisei
Publicado 2014

Real-Time Multirate Multiband Amplification for Hearing Aids

por SOKOLOVA, ALICE, SENGUPTA, DHIMAN, HUNT, MARTIN, GUPTA, RAJESH, AKSANLI, BARIS, HARRIS, FREDRIC, GARUDADRI, HARINATH
Publicado 2022

Diversity in parasitic nematode genomes: the microRNAs of Brugia pahangi and Haemonchus contortus are largely novel

por Winter, Alan D, Weir, William, Hunt, Martin, Berriman, Matthew, Gilleard, John S, Devaney, Eileen, Britton, Collette
Publicado 2012

Circlator: automated circularization of genome assemblies using long sequencing reads

por Hunt, Martin, Silva, Nishadi De, Otto, Thomas D., Parkhill, Julian, Keane, Jacqueline A., Harris, Simon R.
Publicado 2015

Comparison of bacterial genome assembly software for MinION data and their applicability to medical microbiology

por Judge, Kim, Hunt, Martin, Reuter, Sandra, Tracey, Alan, Quail, Michael A., Parkhill, Julian, Peacock, Sharon J.
Publicado 2016

Homozygosity Mapping Reveals Population History and Trait Architecture in Self-Incompatible Pear (Pyrus spp.)

por Kumar, Satish, Deng, Cecilia Hong, Hunt, Martin, Kirk, Chris, Wiedow, Claudia, Rowan, Daryl, Wu, Jun, Brewer, Lester
Publicado 2021

GWAS provides new insights into the genetic mechanisms of phytochemicals production and red skin colour in apple

por Kumar, Satish, Molloy, Claire, Hunt, Martin, Deng, Cecilia Hong, Wiedow, Claudia, Andre, Christelle, Dare, Andrew, McGhie, Tony
Publicado 2022

ARIBA: rapid antimicrobial resistance genotyping directly from sequencing reads

por Hunt, Martin, Mather, Alison E, Sánchez-Busó, Leonor, Page, Andrew J, Parkhill, Julian, Keane, Jacqueline A, Harris, Simon R
Publicado 2017

HPMCD: the database of human microbial communities from metagenomic datasets and microbial reference genomes

por Forster, Samuel C., Browne, Hilary P., Kumar, Nitin, Hunt, Martin, Denise, Hubert, Mitchell, Alex, Finn, Robert D., Lawley, Trevor D.
Publicado 2016

In Vivo Assessment of Resistant Starch Degradation by the Caecal Microbiota of Mice Using RNA-Based Stable Isotope Probing—A Proof-of-Principle Study

por Herrmann, Elena, Young, Wayne, Reichert-Grimm, Verena, Weis, Severin, Riedel, Christian U., Rosendale, Douglas, Stoklosinski, Halina, Hunt, Martin, Egert, Markus
Publicado 2018

Exploring bacterial diversity via a curated and searchable snapshot of archived DNA sequences

por Blackwell, Grace A., Hunt, Martin, Malone, Kerri M., Lima, Leandro, Horesh, Gal, Alako, Blaise T. F., Thomson, Nicholas R., Iqbal, Zamin
Publicado 2021

Robust high-throughput prokaryote de novo assembly and improvement pipeline for Illumina data

por Page, Andrew J., De Silva, Nishadi, Hunt, Martin, Quail, Michael A., Parkhill, Julian, Harris, Simon R., Otto, Thomas D., Keane, Jacqueline A.
Publicado 2016

Annotation of Two Large Contiguous Regions from the Haemonchus contortus Genome Using RNA-seq and Comparative Analysis with Caenorhabditis elegans

por Laing, Roz, Hunt, Martin, Protasio, Anna V., Saunders, Gary, Mungall, Karen, Laing, Steven, Jackson, Frank, Quail, Michael, Beech, Robin, Berriman, Matthew, Gilleard, John S.
Publicado 2011

IVA: accurate de novo assembly of RNA virus genomes

por Hunt, Martin, Gall, Astrid, Ong, Swee Hoe, Brener, Jacqui, Ferns, Bridget, Goulder, Philip, Nastouli, Eleni, Keane, Jacqueline A., Kellam, Paul, Otto, Thomas D.
Publicado 2015