'Next-generation' sequencing becomes 'now-generation'

por Neafsey, Daniel E, Haas, Brian J
Publicado 2011

A clustering method for repeat analysis in DNA sequences

por Volfovsky, Natalia, Haas, Brian J, Salzberg, Steven L
Publicado 2001

How deep is deep enough for RNA-Seq profiling of bacterial transcriptomes?

por Haas, Brian J, Chin, Melissa, Nusbaum, Chad, Birren, Bruce W, Livny, Jonathan
Publicado 2012

UCHIME improves sensitivity and speed of chimera detection

por Edgar, Robert C., Haas, Brian J., Clemente, Jose C., Quince, Christopher, Knight, Rob
Publicado 2011

Accuracy assessment of fusion transcript detection via read-mapping and de novo fusion transcript assembly-based methods

por Haas, Brian J., Dobin, Alexander, Li, Bo, Stransky, Nicolas, Pochet, Nathalie, Regev, Aviv
Publicado 2019

Comprehensive analysis of alternative splicing in rice and comparative analyses with Arabidopsis

por Campbell, Matthew A, Haas, Brian J, Hamilton, John P, Mount, Stephen M, Buell, C Robin
Publicado 2006

Sequencing Medicago truncatula expressed sequenced tags using 454 Life Sciences technology

por Cheung, Foo, Haas, Brian J, Goldberg, Susanne MD, May, Gregory D, Xiao, Yongli, Town, Christopher D
Publicado 2006

Genome level analysis of rice mRNA 3′-end processing signals and alternative polyadenylation

por Shen, Yingjia, Ji, Guoli, Haas, Brian J., Wu, Xiaohui, Zheng, Jianti, Reese, Greg J., Li, Qingshun Quinn
Publicado 2008

Kinannote, a computer program to identify and classify members of the eukaryotic protein kinase superfamily

por Goldberg, Jonathan M., Griggs, Allison D., Smith, Janet L., Haas, Brian J., Wortman, Jennifer R., Zeng, Qiandong
Publicado 2013

Targeted in silico characterization of fusion transcripts in tumor and normal tissues via FusionInspector

por Haas, Brian J., Dobin, Alexander, Ghandi, Mahmoud, Van Arsdale, Anne, Tickle, Timothy, Robinson, James T., Gillani, Riaz, Kasif, Simon, Regev, Aviv
Publicado 2023

A universal genomic coordinate translator for comparative genomics

por Zamani, Neda, Sundström, Görel, Meadows, Jennifer RS, Höppner, Marc P, Dainat, Jacques, Lantz, Henrik, Haas, Brian J, Grabherr, Manfred G
Publicado 2014

Multiplexed mRNA assembly into ribonucleoprotein particles plays an operon-like role in the control of yeast cell physiology

por Nair, Rohini R, Zabezhinsky, Dmitry, Gelin-Licht, Rita, Haas, Brian J, Dyhr, Michael CA, Sperber, Hannah S, Nusbaum, Chad, Gerst, Jeffrey E
Publicado 2021

Full-length messenger RNA sequences greatly improve genome annotation

por Haas, Brian J, Volfovsky, Natalia, Town, Christopher D, Troukhan, Maxim, Alexandrov, Nickolai, Feldmann, Kenneth A, Flavell, Richard B, White, Owen, Salzberg, Steven L
Publicado 2002

Automated eukaryotic gene structure annotation using EVidenceModeler and the Program to Assemble Spliced Alignments

por Haas, Brian J, Salzberg, Steven L, Zhu, Wei, Pertea, Mihaela, Allen, Jonathan E, Orvis, Joshua, White, Owen, Buell, C Robin, Wortman, Jennifer R
Publicado 2008

Characterization of paralogous protein families in rice

por Lin, Haining, Ouyang, Shu, Egan, Amy, Nobuta, Kan, Haas, Brian J, Zhu, Wei, Gu, Xun, Silva, Joana C, Meyers, Blake C, Buell, C Robin
Publicado 2008

SynerClust: a highly scalable, synteny-aware orthologue clustering tool

por Georgescu, Christophe H., Manson, Abigail L., Griggs, Alexander D., Desjardins, Christopher A., Pironti, Alejandro, Wapinski, Ilan, Abeel, Thomas, Haas, Brian J., Earl, Ashlee M.
Publicado 2018

Single-cell RNA-seq reveals changes in cell cycle and differentiation programs upon aging of hematopoietic stem cells

por Kowalczyk, Monika S., Tirosh, Itay, Heckl, Dirk, Rao, Tata Nageswara, Dixit, Atray, Haas, Brian J., Schneider, Rebekka K., Wagers, Amy J., Ebert, Benjamin L., Regev, Aviv
Publicado 2015

Complete reannotation of the Arabidopsis genome: methods, tools, protocols and the final release

por Haas, Brian J, Wortman, Jennifer R, Ronning, Catherine M, Hannick, Linda I, Smith, Roger K, Maiti, Rama, Chan, Agnes P, Yu, Chunhui, Farzad, Maryam, Wu, Dongying, White, Owen, Town, Christopher D
Publicado 2005

von Willebrand factor D and EGF domains is an evolutionarily conserved and required feature of blastemas capable of multitissue appendage regeneration

por Leigh, Nicholas D., Sessa, Sofia, Dragalzew, Aline C., Payzin‐Dogru, Duygu, Sousa, Josane F., Aggouras, Anthony N., Johnson, Kimberly, Dunlap, Garrett S., Haas, Brian J., Levin, Michael, Schneider, Igor, Whited, Jessica L.
Publicado 2020

Efficient and robust RNA-seq process for cultured bacteria and complex community transcriptomes

por Giannoukos, Georgia, Ciulla, Dawn M, Huang, Katherine, Haas, Brian J, Izard, Jacques, Levin, Joshua Z, Livny, Jonathan, Earl, Ashlee M, Gevers, Dirk, Ward, Doyle V, Nusbaum, Chad, Birren, Bruce W, Gnirke, Andreas
Publicado 2012