Differential expression analysis of human endogenous retroviruses based on ENCODE RNA-seq data

por Haase, Kerstin, Mösch, Anja, Frishman, Dmitrij
Publicado 2015

Allele-specific multi-sample copy number segmentation in ASCAT

por Ross, Edith M., Haase, Kerstin, Van Loo, Peter, Markowetz, Florian
Publicado 2021

Universal Patterns of Selection in Cancer and Somatic Tissues

por Martincorena, Iñigo, Raine, Keiran M., Gerstung, Moritz, Dawson, Kevin J., Haase, Kerstin, Van Loo, Peter, Davies, Helen, Stratton, Michael R., Campbell, Peter J.
Publicado 2017

Universal Patterns of Selection in Cancer and Somatic Tissues

por Martincorena, Iñigo, Raine, Keiran M., Gerstung, Moritz, Dawson, Kevin J., Haase, Kerstin, Van Loo, Peter, Davies, Helen, Stratton, Michael R., Campbell, Peter J.
Publicado 2018

Universal Patterns of Selection in Cancer and Somatic Tissues

por Martincorena, Iñigo, Raine, Keiran M., Gerstung, Moritz, Dawson, Kevin J., Haase, Kerstin, Van Loo, Peter, Davies, Helen, Stratton, Michael R., Campbell, Peter J.
Publicado 2018

Subclone Eradication Analysis Identifies Targets for Enhanced Cancer Therapy and Reveals L1 Retrotransposition as a Dynamic Source of Cancer Heterogeneity

por Ketola, Kirsi, Kaljunen, Heidi, Taavitsainen, Sinja, Kaarijärvi, Roosa, Järvelä, Emmi, Rodríguez-Martín, Bernardo, Haase, Kerstin, Woodcock, Dan J., Tubio, Jose, Wedge, David C., Nykter, Matti, Bova, G. Steven
Publicado 2021

Refphase: Multi-sample phasing reveals haplotype-specific copy number heterogeneity

por Watkins, Thomas B. K., Colliver, Emma C., Huska, Matthew R., Kaufmann, Tom L., Lim, Emilia L., Duncan, Cody B., Haase, Kerstin, Van Loo, Peter, Swanton, Charles, McGranahan, Nicholas, Schwarz, Roland F.
Publicado 2023

MEDICC2: whole-genome doubling aware copy-number phylogenies for cancer evolution

por Kaufmann, Tom L., Petkovic, Marina, Watkins, Thomas B. K., Colliver, Emma C., Laskina, Sofya, Thapa, Nisha, Minussi, Darlan C., Navin, Nicholas, Swanton, Charles, Van Loo, Peter, Haase, Kerstin, Tarabichi, Maxime, Schwarz, Roland F.
Publicado 2022

Genomic Evolution and Personalized Therapy of an Infantile Fibrosarcoma Harboring an NTRK Oncogenic Fusion

por Thorwarth, Anne, Haase, Kerstin, Röefzaad, Claudia, Pajtler, Kristian W., Schramm, Kathrin, Hauptmann, Kathrin, Behnke, Anke, Vokuhl, Christian, Elgeti, Thomas, Gratopp, Alexander, Schulte, Johannes H., Scheer, Monika, Hernáiz Driever, Pablo, Nysom, Karsten, Eggert, Angelika, Henssen, Anton G., Deubzer, Hedwig E.
Publicado 2022

Mutational topography reflects clinical neuroblastoma heterogeneity

por Rodriguez-Fos, Elias, Planas-Fèlix, Mercè, Burkert, Martin, Puiggròs, Montserrat, Toedling, Joern, Thiessen, Nina, Blanc, Eric, Szymansky, Annabell, Hertwig, Falk, Ishaque, Naveed, Beule, Dieter, Torrents, David, Eggert, Angelika, Koche, Richard P., Schwarz, Roland F., Haase, Kerstin, Schulte, Johannes H., Henssen, Anton G.
Publicado 2023

Mutually exclusive genetic interactions and gene essentiality shape the genomic landscape of primary melanoma

por Birkeälv, Sofia, Harland, Mark, Matsuyama, Larissa Satiko Alcantara Sekimoto, Rashid, Mamun, Mehta, Ishan, Laye, Jonathan P, Haase, Kerstin, Mell, Tracey, Iyer, Vivek, Robles‐Espinoza, Carla Daniela, McDermott, Ultan, van Loo, Peter, Kuijjer, Marieke L, Possik, Patricia A, Maria Engler, Silvya Stuchi, Bishop, D Timothy, Newton‐Bishop, Julia, Adams, David J
Publicado 2022

Cancer origin tracing and timing in two high-risk prostate cancers using multisample whole genome analysis: prospects for personalized medicine

por Nurminen, Anssi, Jaatinen, Serafiina, Taavitsainen, Sinja, Högnäs, Gunilla, Lesluyes, Tom, Ansari-Pour, Naser, Tolonen, Teemu, Haase, Kerstin, Koskenalho, Antti, Kankainen, Matti, Jasu, Juho, Rauhala, Hanna, Kesäniemi, Jenni, Nikupaavola, Tiia, Kujala, Paula, Rinta-Kiikka, Irina, Riikonen, Jarno, Kaipia, Antti, Murtola, Teemu, Tammela, Teuvo L., Visakorpi, Tapio, Nykter, Matti, Wedge, David C., Van Loo, Peter, Bova, G. Steven
Publicado 2023

Undifferentiated Sarcomas Develop through Distinct Evolutionary Pathways

por Steele, Christopher D., Tarabichi, Maxime, Oukrif, Dahmane, Webster, Amy P., Ye, Hongtao, Fittall, Matthew, Lombard, Patrick, Martincorena, Iñigo, Tarpey, Patrick S., Collord, Grace, Haase, Kerstin, Strauss, Sandra J., Berisha, Fitim, Vaikkinen, Heli, Dhami, Pawan, Jansen, Marnix, Behjati, Sam, Amary, M. Fernanda, Tirabosco, Roberto, Feber, Andrew, Campbell, Peter J., Alexandrov, Ludmil B., Van Loo, Peter, Flanagan, Adrienne M., Pillay, Nischalan
Publicado 2019

Spatial and temporal intratumour heterogeneity has potential consequences for single biopsy-based neuroblastoma treatment decisions

por Schmelz, Karin, Toedling, Joern, Huska, Matt, Cwikla, Maja C., Kruetzfeldt, Louisa-Marie, Proba, Jutta, Ambros, Peter F., Ambros, Inge M., Boral, Sengül, Lodrini, Marco, Chen, Celine Y., Burkert, Martin, Guergen, Dennis, Szymansky, Annabell, Astrahantseff, Kathy, Kuenkele, Annette, Haase, Kerstin, Fischer, Matthias, Deubzer, Hedwig E., Hertwig, Falk, Hundsdoerfer, Patrick, Henssen, Anton G., Schwarz, Roland F., Schulte, Johannes H., Eggert, Angelika
Publicado 2021

Signatures of copy number alterations in human cancer

por Steele, Christopher D., Abbasi, Ammal, Islam, S. M. Ashiqul, Bowes, Amy L., Khandekar, Azhar, Haase, Kerstin, Hames-Fathi, Shadi, Ajayi, Dolapo, Verfaillie, Annelien, Dhami, Pawan, McLatchie, Alex, Lechner, Matt, Light, Nicholas, Shlien, Adam, Malkin, David, Feber, Andrew, Proszek, Paula, Lesluyes, Tom, Mertens, Fredrik, Flanagan, Adrienne M., Tarabichi, Maxime, Van Loo, Peter, Alexandrov, Ludmil B., Pillay, Nischalan
Publicado 2022

Parallel sequencing of extrachromosomal circular DNAs and transcriptomes in single cancer cells

por Chamorro González, Rocío, Conrad, Thomas, Stöber, Maja C., Xu, Robin, Giurgiu, Mădălina, Rodriguez-Fos, Elias, Kasack, Katharina, Brückner, Lotte, van Leen, Eric, Helmsauer, Konstantin, Dorado Garcia, Heathcliff, Stefanova, Maria E., Hung, King L., Bei, Yi, Schmelz, Karin, Lodrini, Marco, Mundlos, Stefan, Chang, Howard Y., Deubzer, Hedwig E., Sauer, Sascha, Eggert, Angelika, Schulte, Johannes H., Schwarz, Roland F., Haase, Kerstin, Koche, Richard P., Henssen, Anton G.
Publicado 2023

Enhancer hijacking determines extrachromosomal circular MYCN amplicon architecture in neuroblastoma

por Helmsauer, Konstantin, Valieva, Maria E., Ali, Salaheddine, Chamorro González, Rocío, Schöpflin, Robert, Röefzaad, Claudia, Bei, Yi, Dorado Garcia, Heathcliff, Rodriguez-Fos, Elias, Puiggròs, Montserrat, Kasack, Katharina, Haase, Kerstin, Keskeny, Csilla, Chen, Celine Y., Kuschel, Luis P., Euskirchen, Philipp, Heinrich, Verena, Robson, Michael I., Rosswog, Carolina, Toedling, Joern, Szymansky, Annabell, Hertwig, Falk, Fischer, Matthias, Torrents, David, Eggert, Angelika, Schulte, Johannes H., Mundlos, Stefan, Henssen, Anton G., Koche, Richard P.
Publicado 2020

Recurrent mutation of IGF signalling genes and distinct patterns of genomic rearrangement in osteosarcoma

por Behjati, Sam, Tarpey, Patrick S., Haase, Kerstin, Ye, Hongtao, Young, Matthew D., Alexandrov, Ludmil B., Farndon, Sarah J., Collord, Grace, Wedge, David C., Martincorena, Inigo, Cooke, Susanna L., Davies, Helen, Mifsud, William, Lidgren, Mathias, Martin, Sancha, Latimer, Calli, Maddison, Mark, Butler, Adam P., Teague, Jon W., Pillay, Nischalan, Shlien, Adam, McDermott, Ultan, Futreal, P. Andrew, Baumhoer, Daniel, Zaikova, Olga, Bjerkehagen, Bodil, Myklebost, Ola, Amary, M. Fernanda, Tirabosco, Roberto, Van Loo, Peter, Stratton, Michael R., Flanagan, Adrienne M., Campbell, Peter J.
Publicado 2017

Therapeutic targeting of ATR in alveolar rhabdomyosarcoma

por Dorado García, Heathcliff, Pusch, Fabian, Bei, Yi, von Stebut, Jennifer, Ibáñez, Glorymar, Guillan, Kristina, Imami, Koshi, Gürgen, Dennis, Rolff, Jana, Helmsauer, Konstantin, Meyer-Liesener, Stephanie, Timme, Natalie, Bardinet, Victor, Chamorro González, Rocío, MacArthur, Ian C., Chen, Celine Y., Schulz, Joachim, Wengner, Antje M., Furth, Christian, Lala, Birgit, Eggert, Angelika, Seifert, Georg, Hundsoerfer, Patrick, Kirchner, Marieluise, Mertins, Philipp, Selbach, Matthias, Lissat, Andrej, Dubois, Frank, Horst, David, Schulte, Johannes H., Spuler, Simone, You, Daoqi, Dela Cruz, Filemon, Kung, Andrew L., Haase, Kerstin, DiVirgilio, Michela, Scheer, Monika, Ortiz, Michael V., Henssen, Anton G.
Publicado 2022

The evolutionary history of 2,658 cancers

por Gerstung, Moritz, Jolly, Clemency, Leshchiner, Ignaty, Dentro, Stefan C., Gonzalez, Santiago, Rosebrock, Daniel, Mitchell, Thomas J., Rubanova, Yulia, Anur, Pavana, Yu, Kaixian, Tarabichi, Maxime, Deshwar, Amit, Wintersinger, Jeff, Kleinheinz, Kortine, Vázquez-García, Ignacio, Haase, Kerstin, Jerman, Lara, Sengupta, Subhajit, Macintyre, Geoff, Malikic, Salem, Donmez, Nilgun, Livitz, Dimitri G., Cmero, Marek, Demeulemeester, Jonas, Schumacher, Steven, Fan, Yu, Yao, Xiaotong, Lee, Juhee, Schlesner, Matthias, Boutros, Paul C., Bowtell, David D., Zhu, Hongtu, Getz, Gad, Imielinski, Marcin, Beroukhim, Rameen, Sahinalp, S. Cenk, Ji, Yuan, Peifer, Martin, Markowetz, Florian, Mustonen, Ville, Yuan, Ke, Wang, Wenyi, Morris, Quaid D., Spellman, Paul T., Wedge, David C., Van Loo, Peter
Publicado 2020