Multi-genome alignment for quality control and contamination screening of next-generation sequencing data

por Hadfield, James, Eldridge, Matthew D.
Publicado 2014

The Evolving COVID-19 Effect on Hip Fracture Patients

por Hadfield, James N., Gray, Andrew C.
Publicado 2020

Development and validation of blood tumor mutational burden reference standards

por Raiber‐Moreau, Eun‐Ang, Portella, Guillem, Butler, Matthew G., Clement, Omoshile, Konigshofer, Yves, Hadfield, James
Publicado 2022

The cost of reducing starting RNA quantity for Illumina BeadArrays: A bead-level dilution experiment

por Lynch, Andy G, Hadfield, James, Dunning, Mark J, Osborne, Michelle, Thorne, Natalie P, Tavaré, Simon
Publicado 2010

Joint visualization of seasonal influenza serology and phylogeny to inform vaccine composition

por Lee, Jover, Hadfield, James, Black, Allison, Sibley, Thomas R., Neher, Richard A., Bedford, Trevor, Huddleston, John
Publicado 2023

Differentiation dynamics of mammary epithelial cells revealed by single-cell RNA sequencing

por Bach, Karsten, Pensa, Sara, Grzelak, Marta, Hadfield, James, Adams, David J., Marioni, John C., Khaled, Walid T.
Publicado 2017

Mycoplasma genitalium: whole genome sequence analysis, recombination and population structure

por Fookes, Maria C., Hadfield, James, Harris, Simon, Parmar, Surendra, Unemo, Magnus, Jensen, Jørgen S., Thomson, Nicholas R.
Publicado 2017

Phandango: an interactive viewer for bacterial population genomics

por Hadfield, James, Croucher, Nicholas J, Goater, Richard J, Abudahab, Khalil, Aanensen, David M, Harris, Simon R
Publicado 2018

Nextstrain: real-time tracking of pathogen evolution

por Hadfield, James, Megill, Colin, Bell, Sidney M, Huddleston, John, Potter, Barney, Callender, Charlton, Sagulenko, Pavel, Bedford, Trevor, Neher, Richard A
Publicado 2018

The Nature and Extent of Plasmid Variation in Chlamydia trachomatis

por Jones, Charlotte A., Hadfield, James, Thomson, Nicholas R., Cleary, David W., Marsh, Peter, Clarke, Ian N., O’Neill, Colette E.
Publicado 2020

Real-Time Genomics for Tracking Severe Acute Respiratory Syndrome Coronavirus 2 Border Incursions after Virus Elimination, New Zealand

por Douglas, Jordan, Geoghegan, Jemma L., Hadfield, James, Bouckaert, Remco, Storey, Matthew, Ren, Xiaoyun, de Ligt, Joep, French, Nigel, Welch, David
Publicado 2021

The Open-Fracture Patient Evaluation Nationwide (OPEN) study: epidemiology of open fracture care in the UK

por Hadfield, James N., Omogbehin, Tomisin S., Brookes, Charlotte, Walker, Reece, Trompeter, Alex, Bretherton, Christopher P., Gray, Andrew, Eardley, William G. P.
Publicado 2022

Augur: a bioinformatics toolkit for phylogenetic analyses of human pathogens

por Huddleston, John, Hadfield, James, Sibley, Thomas R., Lee, Jover, Fay, Kairsten, Ilcisin, Misja, Harkins, Elias, Bedford, Trevor, Neher, Richard A., Hodcroft, Emma B.
Publicado 2021

Tracing the international arrivals of SARS-CoV-2 Omicron variants after Aotearoa New Zealand reopened its border

por Douglas, Jordan, Winter, David, McNeill, Andrea, Carr, Sam, Bunce, Michael, French, Nigel, Hadfield, James, de Ligt, Joep, Welch, David, Geoghegan, Jemma L.
Publicado 2022

The pitfalls of platform comparison: DNA copy number array technologies assessed

por Curtis, Christina, Lynch, Andy G, Dunning, Mark J, Spiteri, Inmaculada, Marioni, John C, Hadfield, James, Chin, Suet-Feung, Brenton, James D, Tavaré, Simon, Caldas, Carlos
Publicado 2009

Genomic epidemiology of Delta SARS-CoV-2 during transition from elimination to suppression in Aotearoa New Zealand

por Jelley, Lauren, Douglas, Jordan, Ren, Xiaoyun, Winter, David, McNeill, Andrea, Huang, Sue, French, Nigel, Welch, David, Hadfield, James, de Ligt, Joep, Geoghegan, Jemma L.
Publicado 2022

Twenty years of West Nile virus spread and evolution in the Americas visualized by Nextstrain

por Hadfield, James, Brito, Anderson F., Swetnam, Daniele M., Vogels, Chantal B. F., Tokarz, Ryan E., Andersen, Kristian G., Smith, Ryan C., Bedford, Trevor, Grubaugh, Nathan D.
Publicado 2019

Disseminated Mycobacterium malmoense and Salmonella Infections Associated with a Novel Variant in NFKBIA

por Staples, Emily, Morillo-Gutierrez, Beatriz, Davies, Jessica, Petersheim, Daniel, Massaad, Michel, Slatter, Mary, Dimou, Dimitra, Doffinger, Rainer, Hackett, Scott, Kumararatne, Dinkantha, Hadfield, James, Eldridge, Matthew D., Geha, Raif S., Abinun, Mario, Thaventhiran, James E. D.
Publicado 2017

Phylodynamics reveals the role of human travel and contact tracing in controlling the first wave of COVID-19 in four island nations

por Douglas, Jordan, Mendes, Fábio K, Bouckaert, Remco, Xie, Dong, Jiménez-Silva, Cinthy L, Swanepoel, Christiaan, de Ligt, Joep, Ren, Xiaoyun, Storey, Matt, Hadfield, James, Simpson, Colin R, Geoghegan, Jemma L, Drummond, Alexei J, Welch, David
Publicado 2021

Independence of HIF1a and androgen signaling pathways in prostate cancer

por Tran, Maxine G. B., Bibby, Becky A. S., Yang, Lingjian, Lo, Franklin, Warren, Anne Y., Shukla, Deepa, Osborne, Michelle, Hadfield, James, Carroll, Thomas, Stark, Rory, Scott, Helen, Ramos-Montoya, Antonio, Massie, Charlie, Maxwell, Patrick, West, Catharine M. L., Mills, Ian G., Neal, David E.
Publicado 2020