Functional diversification of sonic hedgehog paralog enhancers identified by phylogenomic reconstruction

por Hadzhiev, Yavor, Lang, Michael, Ertzer, Raymond, Meyer, Axel, Strähle, Uwe, Müller, Ferenc
Publicado 2007

Hedgehog signaling patterns the outgrowth of unpaired skeletal appendages in zebrafish

por Hadzhiev, Yavor, Lele, Zsolt, Schindler, Simone, Wilson, Stephen W, Ahlberg, Per, Strähle, Uwe, Müller, Ferenc
Publicado 2007

Ancestrally Duplicated Conserved Noncoding Element Suggests Dual Regulatory Roles of HOTAIR in cis and trans

por Nepal, Chirag, Taranta, Andrzej, Hadzhiev, Yavor, Pundhir, Sachin, Mydel, Piotr, Lenhard, Boris, Müller, Ferenc, Andersen, Jesper B.
Publicado 2020

Two Lamprey Hedgehog Genes Share Non-Coding Regulatory Sequences and Expression Patterns with Gnathostome Hedgehogs

por Kano, Shungo, Xiao, Jin-Hua, Osório, Joana, Ekker, Marc, Hadzhiev, Yavor, Müller, Ferenc, Casane, Didier, Magdelenat, Ghislaine, Rétaux, Sylvie
Publicado 2010

Conservation of shh cis-regulatory architecture of the coelacanth is consistent with its ancestral phylogenetic position

por Lang, Michael, Hadzhiev, Yavor, Siegel, Nicol, Amemiya, Chris T, Parada, Carolina, Strähle, Uwe, Becker, May-Britt, Müller, Ferenc, Meyer, Axel
Publicado 2010

The Tetraodon nigroviridis reference transcriptome: developmental transition, length retention and microsynteny of long non-coding RNAs in a compact vertebrate genome

por Basu, Swaraj, Hadzhiev, Yavor, Petrosino, Giuseppe, Nepal, Chirag, Gehrig, Jochen, Armant, Olivier, Ferg, Marco, Strahle, Uwe, Sanges, Remo, Müller, Ferenc
Publicado 2016

Transcriptional, post-transcriptional and chromatin-associated regulation of pri-miRNAs, pre-miRNAs and moRNAs

por Nepal, Chirag, Coolen, Marion, Hadzhiev, Yavor, Cussigh, Delphine, Mydel, Piotr, Steen, Vidar M., Carninci, Piero, Andersen, Jesper B., Bally-Cuif, Laure, Müller, Ferenc, Lenhard, Boris
Publicado 2016

Expression and knockdown of zebrafish folliculin suggests requirement for embryonic brain morphogenesis

por Kenyon, Emma J., Luijten, Monique N. H., Gill, Harmeet, Li, Nan, Rawlings, Matthew, Bull, James C., Hadzhiev, Yavor, van Steensel, Maurice A. M., Maher, Eamonn, Mueller, Ferenc
Publicado 2016

Dual-initiation promoters with intertwined canonical and TCT/TOP transcription start sites diversify transcript processing

por Nepal, Chirag, Hadzhiev, Yavor, Balwierz, Piotr, Tarifeño-Saldivia, Estefanía, Cardenas, Ryan, Wragg, Joseph W., Suzuki, Ana-Maria, Carninci, Piero, Peers, Bernard, Lenhard, Boris, Andersen, Jesper B., Müller, Ferenc
Publicado 2020

Germ cell differentiation requires Tdrd7-dependent chromatin and transcriptome reprogramming marked by germ plasm relocalization

por D’Orazio, Fabio M., Balwierz, Piotr J., González, Ada Jimenez, Guo, Yixuan, Hernández-Rodríguez, Benjamín, Wheatley, Lucy, Jasiulewicz, Aleksandra, Hadzhiev, Yavor, Vaquerizas, Juan M., Cairns, Bradley, Lenhard, Boris, Müller, Ferenc
Publicado 2021

A cell cycle-coordinated Polymerase II transcription compartment encompasses gene expression before global genome activation

por Hadzhiev, Yavor, Qureshi, Haseeb K., Wheatley, Lucy, Cooper, Ledean, Jasiulewicz, Aleksandra, Van Nguyen, Huy, Wragg, Joseph W., Poovathumkadavil, Divyasree, Conic, Sascha, Bajan, Sarah, Sik, Attila, Hutvàgner, György, Tora, Làszlò, Gambus, Agnieszka, Fossey, John S., Müller, Ferenc
Publicado 2019

Two independent transcription initiation codes overlap on vertebrate core promoters

por Haberle, Vanja, Li, Nan, Hadzhiev, Yavor, Plessy, Charles, Previti, Christopher, Nepal, Chirag, Gehrig, Jochen, Dong, Xianjun, Akalin, Altuna, Suzuki, Ana Maria, van IJcken, Wilfred F.J., Armant, Olivier, Ferg, Marco, Strähle, Uwe, Carninci, Piero, Müller, Ferenc, Lenhard, Boris
Publicado 2014

Highly conserved elements discovered in vertebrates are present in non-syntenic loci of tunicates, act as enhancers and can be transcribed during development

por Sanges, Remo, Hadzhiev, Yavor, Gueroult-Bellone, Marion, Roure, Agnes, Ferg, Marco, Meola, Nicola, Amore, Gabriele, Basu, Swaraj, Brown, Euan R., De Simone, Marco, Petrera, Francesca, Licastro, Danilo, Strähle, Uwe, Banfi, Sandro, Lemaire, Patrick, Birney, Ewan, Müller, Ferenc, Stupka, Elia
Publicado 2013

Enhancers active in dopamine neurons are a primary link between genetic variation and neuropsychiatric disease

por Dong, Xianjun, Liao, Zhixiang, Gritsch, David, Hadzhiev, Yavor, Bai, Yunfei, Locascio, Joseph J, Guennewig, Boris, Liu, Ganqiang, Blauwendraat, Cornelis, Wang, Tao, Adler, Charles H, Hedreen, John C, Faull, Richard L M, Frosch, Matthew P, Nelson, Peter T, Rizzu, Patrizia, Cooper, Antony A, Heutink, Peter, Beach, Thomas G, Mattick, John S, Müller, Ferenc, Scherzer, Clemens R
Publicado 2018

Dynamic regulation of the transcription initiation landscape at single nucleotide resolution during vertebrate embryogenesis

por Nepal, Chirag, Hadzhiev, Yavor, Previti, Christopher, Haberle, Vanja, Li, Nan, Takahashi, Hazuki, Suzuki, Ana Maria M., Sheng, Ying, Abdelhamid, Rehab F., Anand, Santosh, Gehrig, Jochen, Akalin, Altuna, Kockx, Christel E.M., van der Sloot, Antoine A.J., van IJcken, Wilfred F.J., Armant, Olivier, Rastegar, Sepand, Watson, Craig, Strähle, Uwe, Stupka, Elia, Carninci, Piero, Lenhard, Boris, Müller, Ferenc
Publicado 2013

Multiomic atlas with functional stratification and developmental dynamics of zebrafish cis-regulatory elements

por Baranasic, Damir, Hörtenhuber, Matthias, Balwierz, Piotr J., Zehnder, Tobias, Mukarram, Abdul Kadir, Nepal, Chirag, Várnai, Csilla, Hadzhiev, Yavor, Jimenez-Gonzalez, Ada, Li, Nan, Wragg, Joseph, D’Orazio, Fabio M., Relic, Dorde, Pachkov, Mikhail, Díaz, Noelia, Hernández-Rodríguez, Benjamín, Chen, Zelin, Stoiber, Marcus, Dong, Michaël, Stevens, Irene, Ross, Samuel E., Eagle, Anne, Martin, Ryan, Obasaju, Oluwapelumi, Rastegar, Sepand, McGarvey, Alison C., Kopp, Wolfgang, Chambers, Emily, Wang, Dennis, Kim, Hyejeong R., Acemel, Rafael D., Naranjo, Silvia, Łapiński, Maciej, Chong, Vanessa, Mathavan, Sinnakaruppan, Peers, Bernard, Sauka-Spengler, Tatjana, Vingron, Martin, Carninci, Piero, Ohler, Uwe, Lacadie, Scott Allen, Burgess, Shawn M., Winata, Cecilia, van Eeden, Freek, Vaquerizas, Juan M., Gómez-Skarmeta, José Luis, Onichtchouk, Daria, Brown, Ben James, Bogdanovic, Ozren, van Nimwegen, Erik, Westerfield, Monte, Wardle, Fiona C., Daub, Carsten O., Lenhard, Boris, Müller, Ferenc
Publicado 2022