Normalization and variance stabilization of single-cell RNA-seq data using regularized negative binomial regression

por Hafemeister, Christoph, Satija, Rahul
Publicado 2019

Robust data-driven incorporation of prior knowledge into the inference of dynamic regulatory networks

por Greenfield, Alex, Hafemeister, Christoph, Bonneau, Richard
Publicado 2013

Constrained mixture estimation for analysis and robust classification of clinical time series

por Costa, Ivan G., Schönhuth, Alexander, Hafemeister, Christoph, Schliep, Alexander
Publicado 2009

Inferring differentiation pathways from gene expression

por Costa, Ivan G., Roepcke, Stefan, Hafemeister, Christoph, Schliep, Alexander
Publicado 2008

Inference of Bacterial Small RNA Regulatory Networks and Integration with Transcription Factor-Driven Regulatory Networks

por Arrieta-Ortiz, Mario L., Hafemeister, Christoph, Shuster, Bentley, Baliga, Nitin S., Bonneau, Richard, Eichenberger, Patrick
Publicado 2020

Identification of Global Alteration of Translational Regulation in Glioma In Vivo

por Helmy, Karim, Halliday, John, Fomchenko, Elena, Setty, Manu, Pitter, Ken, Hafemeister, Christoph, Holland, Eric C.
Publicado 2012

Large-scale simultaneous measurement of epitopes and transcriptomes in single cells

por Stoeckius, Marlon, Hafemeister, Christoph, Stephenson, William, Houck-Loomis, Brian, Chattopadhyay, Pratip K., Swerdlow, Harold, Satija, Rahul, Smibert, Peter
Publicado 2017

Developmental diversification of cortical inhibitory interneurons

por Mayer, Christian, Hafemeister, Christoph, Bandler, Rachel C., Machold, Robert, Brito, Renata Batista, Jaglin, Xavier, Allaway, Kathryn, Butler, Andrew, Fishell, Gord, Satija, Rahul
Publicado 2018

Multiple abiotic stimuli are integrated in the regulation of rice gene expression under field conditions

por Plessis, Anne, Hafemeister, Christoph, Wilkins, Olivia, Gonzaga, Zennia Jean, Meyer, Rachel Sarah, Pires, Inês, Müller, Christian, Septiningsih, Endang M, Bonneau, Richard, Purugganan, Michael
Publicado 2015

Optimized design of single-cell RNA sequencing experiments for cell-type-specific eQTL analysis

por Mandric, Igor, Schwarz, Tommer, Majumdar, Arunabha, Hou, Kangcheng, Briscoe, Leah, Perez, Richard, Subramaniam, Meena, Hafemeister, Christoph, Satija, Rahul, Ye, Chun Jimmie, Pasaniuc, Bogdan, Halperin, Eran
Publicado 2020

An experimentally supported model of the Bacillus subtilis global transcriptional regulatory network

por Arrieta‐Ortiz, Mario L, Hafemeister, Christoph, Bate, Ashley Rose, Chu, Timothy, Greenfield, Alex, Shuster, Bentley, Barry, Samantha N, Gallitto, Matthew, Liu, Brian, Kacmarczyk, Thadeous, Santoriello, Francis, Chen, Jie, Rodrigues, Christopher DA, Sato, Tsutomu, Rudner, David Z, Driks, Adam, Bonneau, Richard, Eichenberger, Patrick
Publicado 2015

Gene selection for optimal prediction of cell position in tissues from single-cell transcriptomics data

por Tanevski, Jovan, Nguyen, Thin, Truong, Buu, Karaiskos, Nikos, Ahsen, Mehmet Eren, Zhang, Xinyu, Shu, Chang, Xu, Ke, Liang, Xiaoyu, Hu, Ying, Pham, Hoang VV, Xiaomei, Li, Le, Thuc D, Tarca, Adi L, Bhatti, Gaurav, Romero, Roberto, Karathanasis, Nestoras, Loher, Phillipe, Chen, Yang, Ouyang, Zhengqing, Mao, Disheng, Zhang, Yuping, Zand, Maryam, Ruan, Jianhua, Hafemeister, Christoph, Qiu, Peng, Tran, Duc, Nguyen, Tin, Gabor, Attila, Yu, Thomas, Guinney, Justin, Glaab, Enrico, Krause, Roland, Banda, Peter, Stolovitzky, Gustavo, Rajewsky, Nikolaus, Saez-Rodriguez, Julio, Meyer, Pablo
Publicado 2020