Systematic image-driven analysis of the spatial Drosophila embryonic expression landscape

por Frise, Erwin, Hammonds, Ann S, Celniker, Susan E
Publicado 2010

Complete Genome Sequence of Enterococcus durans Oregon-R-modENCODE Strain BDGP3, a Lactic Acid Bacterium Found in the Drosophila melanogaster Gut

por Wan, Kenneth H., Yu, Charles, Park, Soo, Hammonds, Ann S., Booth, Benjamin W., Celniker, Susan E.
Publicado 2017

Complete Genome Sequence of Bacillus kochii Oregon-R-modENCODE Strain BDGP4, Isolated from Drosophila melanogaster Gut

por Wan, Kenneth H., Yu, Charles, Park, Soo, Hammonds, Ann S., Booth, Benjamin W., Celniker, Susan E.
Publicado 2017

Complete Genome Sequence of Lactobacillus plantarum Oregon-R-modENCODE Strain BDGP2 Isolated from Drosophila melanogaster Gut

por Wan, Kenneth H., Yu, Charles, Park, Soo, Hammonds, Ann S., Booth, Benjamin W., Celniker, Susan E.
Publicado 2017

Complete Genome Sequence of Acetobacter tropicalis Oregon-R-modENCODE Strain BDGP1, an Acetic Acid Bacterium Found in the Drosophila melanogaster Gut

por Wan, Kenneth H., Yu, Charles, Park, Soo, Hammonds, Ann S., Booth, Benjamin W., Celniker, Susan E.
Publicado 2017

Complete Genome Sequence of Acetobacter pomorum Oregon-R-modENCODE Strain BDGP5, an Acetic Acid Bacterium Found in the Drosophila melanogaster Gut

por Wan, Kenneth H., Yu, Charles, Park, Soo, Hammonds, Ann S., Booth, Benjamin W., Celniker, Susan E.
Publicado 2017

Chromosomal Sequence of Lactobacillus brevis Oregon-R-modENCODE Strain BDGP6, a Lactic Acid Bacterium Isolated from the Gut of Drosophila melanogaster

por Wan, Kenneth H., Yu, Charles, Park, Soo, Hammonds, Ann S., Booth, Benjamin W., Celniker, Susan E.
Publicado 2020

OpenHiCAMM: High-Content Screening Software for Complex Microscope Imaging Workflows

por Booth, Benjamin W., McParland, Charles, Beattie, Keith, Fisher, William W., Hammonds, Ann S., Celniker, Susan E., Frise, Erwin
Publicado 2018

Spatial expression of transcription factors in Drosophila embryonic organ development

por Hammonds, Ann S, Bristow, Christopher A, Fisher, William W, Weiszmann, Richard, Wu, Siqi, Hartenstein, Volker, Kellis, Manolis, Yu, Bin, Frise, Erwin, Celniker, Susan E
Publicado 2013

A modERN resource: identification of Drosophila transcription factor candidate target genes using RNAi

por Fisher, William W, Hammonds, Ann S, Weiszmann, Richard, Booth, Benjamin W, Gevirtzman, Louis, Patton, Jaeda E J, Kubo, Connor A, Waterston, Robert H, Celniker, Susan E
Publicado 2023

Quantitative Analysis of the Drosophila Segmentation Regulatory Network Using Pattern Generating Potentials

por Kazemian, Majid, Blatti, Charles, Richards, Adam, McCutchan, Michael, Wakabayashi-Ito, Noriko, Hammonds, Ann S., Celniker, Susan E., Kumar, Sudhir, Wolfe, Scot A., Brodsky, Michael H., Sinha, Saurabh
Publicado 2010

Correction: Quantitative Analysis of the Drosophila Segmentation Regulatory Network Using Pattern Generating Potentials

por Kazemian, Majid, Blatti, Charles, Richards, Adam, McCutchan, Michael, Wakabayashi-Ito, Noriko, Hammonds, Ann S., Celniker, Susan E., Kumar, Sudhir, Wolfe, Scot A., Brodsky, Michael H., Sinha, Saurabh
Publicado 2013

Dynamic reprogramming of chromatin accessibility during Drosophila embryo development

por Thomas, Sean, Li, Xiao-Yong, Sabo, Peter J, Sandstrom, Richard, Thurman, Robert E, Canfield, Theresa K, Giste, Erika, Fisher, William, Hammonds, Ann, Celniker, Susan E, Biggin, Mark D, Stamatoyannopoulos, John A
Publicado 2011

Toll Mediated Infection Response Is Altered by Gravity and Spaceflight in Drosophila

por Taylor, Katherine, Kleinhesselink, Kurt, George, Michael D., Morgan, Rachel, Smallwood, Tangi, Hammonds, Ann S., Fuller, Patrick M., Saelao, Perot, Alley, Jeff, Gibbs, Allen G., Hoshizaki, Deborah K., von Kalm, Laurence, Fuller, Charles A., Beckingham, Kathleen M., Kimbrell, Deborah A.
Publicado 2014

Exploiting regulatory heterogeneity to systematically identify enhancers with high accuracy

por Arbel, Hamutal, Basu, Sumanta, Fisher, William W., Hammonds, Ann S., Wan, Kenneth H., Park, Soo, Weiszmann, Richard, Booth, Benjamin W., Keranen, Soile V., Henriquez, Clara, Shams Solari, Omid, Bickel, Peter J., Biggin, Mark D., Celniker, Susan E., Brown, James B.
Publicado 2019

An integrated host-microbiome response to atrazine exposure mediates toxicity in Drosophila

por Brown, James B., Langley, Sasha A., Snijders, Antoine M., Wan, Kenneth H., Morris, Siti Nur Sarah, Booth, Benjamin W., Fisher, William W., Hammonds, Ann S., Park, Soo, Weiszmann, Richard, Yu, Charles, Kirwan, Jennifer A., Weber, Ralf J. M., Viant, Mark R., Mao, Jian-Hua, Celniker, Susan E.
Publicado 2021

Diversity and dynamics of the Drosophila transcriptome

por Brown, James B., Boley, Nathan, Eisman, Robert, May, Gemma E., Stoiber, Marcus H., Duff, Michael O., Booth, Ben W., Wen, Jiayu, Park, Soo, Suzuki, Ana Maria, Wan, Kenneth H., Yu, Charles, Zhang, Dayu, Carlson, Joseph W., Cherbas, Lucy, Eads, Brian D., Miller, David, Mockaitis, Keithanne, Roberts, Johnny, Davis, Carrie A., Frise, Erwin, Hammonds, Ann S., Olson, Sara, Shenker, Sol, Sturgill, David, Samsonova, Anastasia A., Weiszmann, Richard, Robinson, Garret, Hernandez, Juan, Andrews, Justen, Bickel, Peter J., Carninci, Piero, Cherbas, Peter, Gingeras, Thomas R., Hoskins, Roger A., Kaufman, Thomas C., Lai, Eric C., Oliver, Brian, Perrimon, Norbert, Graveley, Brenton R., Celniker, Susan E.
Publicado 2014

The Developmental Transcriptome of Drosophila melanogaster

por Graveley, Brenton R., Brooks, Angela N., Carlson, Joseph W., Duff, Michael O., Landolin, Jane M., Yang, Li, Artieri, Carlo G., van Baren, Marijke J., Boley, Nathan, Booth, Benjamin W., Brown, James B., Cherbas, Lucy, Davis, Carrie A., Dobin, Alex, Li, Renhua, Lin, Wei, Malone, John H., Mattiuzzo, Nicolas R., Miller, David, Sturgill, David, Tuch, Brian B., Zaleski, Chris, Zhang, Dayu, Blanchette, Marco, Dudoit, Sandrine, Eads, Brian, Green, Richard E., Hammonds, Ann, Jiang, Lichun, Kapranov, Phil, Langton, Laura, Perrimon, Norbert, Sandler, Jeremy E., Wan, Kenneth H., Willingham, Aarron, Zhang, Yu, Zou, Yi, Andrews, Justen, Bickel, Peter J., Brenner, Steven E., Brent, Michael R., Cherbas, Peter, Gingeras, Thomas R., Hoskins, Roger A., Kaufman, Thomas C., Oliver, Brian, Celniker, Susan E.
Publicado 2010

Comparative Analysis of the Transcriptome across Distant Species

por Gerstein, Mark B., Rozowsky, Joel, Yan, Koon-Kiu, Wang, Daifeng, Cheng, Chao, Brown, James B., Davis, Carrie A, Hillier, LaDeana, Sisu, Cristina, Li, Jingyi Jessica, Pei, Baikang, Harmanci, Arif O., Duff, Michael O., Djebali, Sarah, Alexander, Roger P., Alver, Burak H., Auerbach, Raymond, Bell, Kimberly, Bickel, Peter J., Boeck, Max E., Boley, Nathan P., Booth, Benjamin W., Cherbas, Lucy, Cherbas, Peter, Di, Chao, Dobin, Alex, Drenkow, Jorg, Ewing, Brent, Fang, Gang, Fastuca, Megan, Feingold, Elise A., Frankish, Adam, Gao, Guanjun, Good, Peter J., Guigó, Roderic, Hammonds, Ann, Harrow, Jen, Hoskins, Roger A., Howald, Cédric, Hu, Long, Huang, Haiyan, Hubbard, Tim J. P., Huynh, Chau, Jha, Sonali, Kasper, Dionna, Kato, Masaomi, Kaufman, Thomas C., Kitchen, Robert R., Ladewig, Erik, Lagarde, Julien, Lai, Eric, Leng, Jing, Lu, Zhi, MacCoss, Michael, May, Gemma, McWhirter, Rebecca, Merrihew, Gennifer, Miller, David M., Mortazavi, Ali, Murad, Rabi, Oliver, Brian, Olson, Sara, Park, Peter J., Pazin, Michael J., Perrimon, Norbert, Pervouchine, Dmitri, Reinke, Valerie, Reymond, Alexandre, Robinson, Garrett, Samsonova, Anastasia, Saunders, Gary I., Schlesinger, Felix, Sethi, Anurag, Slack, Frank J., Spencer, William C., Stoiber, Marcus H., Strasbourger, Pnina, Tanzer, Andrea, Thompson, Owen A., Wan, Kenneth H., Wang, Guilin, Wang, Huaien, Watkins, Kathie L., Wen, Jiayu, Wen, Kejia, Xue, Chenghai, Yang, Li, Yip, Kevin, Zaleski, Chris, Zhang, Yan, Zheng, Henry, Brenner, Steven E., Graveley, Brenton R., Celniker, Susan E., Gingeras, Thomas R, Waterston, Robert
Publicado 2014