RIPCAL: a tool for alignment-based analysis of repeat-induced point mutations in fungal genomic sequences

por Hane, James K, Oliver, Richard P
Publicado 2008

In silico reversal of repeat-induced point mutation (RIP) identifies the origins of repeat families and uncovers obscured duplicated genes

por Hane, James K, Oliver, Richard P
Publicado 2010

The Molecular Docking of MAX Fungal Effectors with Plant HMA Domain-Binding Proteins

por Rozano, Lina, Hane, James K., Mancera, Ricardo L.
Publicado 2023

OcculterCut: A Comprehensive Survey of AT-Rich Regions in Fungal Genomes

por Testa, Alison C., Oliver, Richard P., Hane, James K.
Publicado 2016

Remote homology clustering identifies lowly conserved families of effector proteins in plant-pathogenic fungi

por Jones, Darcy A. B., Moolhuijzen, Paula M., Hane, James K.
Publicado 2021

Ab Initio Modelling of the Structure of ToxA-like and MAX Fungal Effector Proteins

por Rozano, Lina, Mukuka, Yvonne M., Hane, James K., Mancera, Ricardo L.
Publicado 2023

Resequencing and Comparative Genomics of Stagonospora nodorum: Sectional Gene Absence and Effector Discovery

por Syme, Robert Andrew, Hane, James K., Friesen, Timothy L., Oliver, Richard P.
Publicado 2013

CodingQuarry: highly accurate hidden Markov model gene prediction in fungal genomes using RNA-seq transcripts

por Testa, Alison C, Hane, James K, Ellwood, Simon R, Oliver, Richard P
Publicado 2015

Genome Sequencing and Comparative Genomics of the Broad Host-Range Pathogen Rhizoctonia solani AG8

por Hane, James K., Anderson, Jonathan P., Williams, Angela H., Sperschneider, Jana, Singh, Karam B.
Publicado 2014

Evaluation of Secretion Prediction Highlights Differing Approaches Needed for Oomycete and Fungal Effectors

por Sperschneider, Jana, Williams, Angela H., Hane, James K., Singh, Karam B., Taylor, Jennifer M.
Publicado 2015

Crop-Zone Weed Mycobiomes of the South-Western Australian Grain Belt

por Michael, Pippa J., Jones, Darcy, White, Nicole, Hane, James K., Bunce, Michael, Gibberd, Mark
Publicado 2020

Chromosome-level genome assembly and manually-curated proteome of model necrotroph Parastagonospora nodorum Sn15 reveals a genome-wide trove of candidate effector homologs, and red...

por Bertazzoni, Stefania, Jones, Darcy A. B., Phan, Huyen T., Tan, Kar-Chun, Hane, James K.
Publicado 2021

The Arabidopsis KH-Domain RNA-Binding Protein ESR1 Functions in Components of Jasmonate Signalling, Unlinking Growth Restraint and Resistance to Stress

por Thatcher, Louise F., Kamphuis, Lars G., Hane, James K., Oñate-Sánchez, Luis, Singh, Karam B.
Publicado 2015

Reactive Oxygen Species Play a Role in the Infection of the Necrotrophic Fungi, Rhizoctonia solani in Wheat

por Foley, Rhonda C., Kidd, Brendan N., Hane, James K., Anderson, Jonathan P., Singh, Karam B.
Publicado 2016

“CATAStrophy,” a Genome-Informed Trophic Classification of Filamentous Plant Pathogens – How Many Different Types of Filamentous Plant Pathogens Are There?

por Hane, James K., Paxman, Jonathan, Jones, Darcy A. B., Oliver, Richard P., de Wit, Pierre
Publicado 2020

Deep proteogenomics; high throughput gene validation by multidimensional liquid chromatography and mass spectrometry of proteins from the fungal wheat pathogen Stagonospora nodorum

por Bringans, Scott, Hane, James K, Casey, Tammy, Tan, Kar-Chun, Lipscombe, Richard, Solomon, Peter S, Oliver, Richard P
Publicado 2009

A novel mode of chromosomal evolution peculiar to filamentous Ascomycete fungi

por Hane, James K, Rouxel, Thierry, Howlett, Barbara J, Kema, Gert HJ, Goodwin, Stephen B, Oliver, Richard P
Publicado 2011

A comparative hidden Markov model analysis pipeline identifies proteins characteristic of cereal-infecting fungi

por Sperschneider, Jana, Gardiner, Donald M, Taylor, Jennifer M, Hane, James K, Singh, Karam B, Manners, John M
Publicado 2013

Transcriptome sequencing of different narrow-leafed lupin tissue types provides a comprehensive uni-gene assembly and extensive gene-based molecular markers

por Kamphuis, Lars G, Hane, James K, Nelson, Matthew N, Gao, Lingling, Atkins, Craig A, Singh, Karam B
Publicado 2015

Utilizing Gene Tree Variation to Identify Candidate Effector Genes in Zymoseptoria tritici

por McDonald, Megan C., McGinness, Lachlan, Hane, James K., Williams, Angela H., Milgate, Andrew, Solomon, Peter S.
Publicado 2016