High-throughput sequencing of cytosine methylation in plant DNA

por Hardcastle, Thomas J
Publicado 2013

Methods for discovering genomic loci exhibiting complex patterns of differential methylation

por Hardcastle, Thomas J.
Publicado 2017

baySeq: Empirical Bayesian methods for identifying differential expression in sequence count data

por Hardcastle, Thomas J, Kelly, Krystyna A
Publicado 2010

Getting a Full Dose? Reconsidering Sex Chromosome Dosage Compensation in the Silkworm, Bombyx mori

por Walters, James R., Hardcastle, Thomas J.
Publicado 2011

Empirical Bayesian analysis of paired high-throughput sequencing data with a beta-binomial distribution

por Hardcastle, Thomas J, Kelly, Krystyna A
Publicado 2013

Sex Chromosome Dosage Compensation in Heliconius Butterflies: Global yet Still Incomplete?

por Walters, James R., Hardcastle, Thomas J., Jiggins, Chris D.
Publicado 2015

Towards annotating the plant epigenome: the Arabidopsis thaliana small RNA locus map

por Hardcastle, Thomas J., Müller, Sebastian Y., Baulcombe, David C.
Publicado 2018

Metastable Differentially Methylated Regions within Arabidopsis Inbred Populations Are Associated with Modified Expression of Non-Coding Transcripts

por Havecker, Ericka R., Wallbridge, Laura M., Fedito, Paola, Hardcastle, Thomas J., Baulcombe, David C.
Publicado 2012

DNA methylation epigenetically silences crossover hot spots and controls chromosomal domains of meiotic recombination in Arabidopsis

por Yelina, Nataliya E., Lambing, Christophe, Hardcastle, Thomas J., Zhao, Xiaohui, Santos, Bruno, Henderson, Ian R.
Publicado 2015

A novel DCL2-dependent miRNA pathway in tomato affects susceptibility to RNA viruses

por Wang, Zhengming, Hardcastle, Thomas J., Canto Pastor, Alex, Yip, Wing Hin, Tang, Shuoya, Baulcombe, David C.
Publicado 2018

Transcriptome dynamics at Arabidopsis graft junctions reveal an intertissue recognition mechanism that activates vascular regeneration

por Melnyk, Charles W., Gabel, Alexander, Hardcastle, Thomas J., Robinson, Sarah, Miyashima, Shunsuke, Grosse, Ivo, Meyerowitz, Elliot M.
Publicado 2018

The use of duplex-specific nuclease in ribosome profiling and a user-friendly software package for Ribo-seq data analysis

por Chung, Betty Y., Hardcastle, Thomas J., Jones, Joshua D., Irigoyen, Nerea, Firth, Andrew E., Baulcombe, David C., Brierley, Ian
Publicado 2015

Arabidopsis meiotic crossover hotspots overlap with H2A.Z nucleosomes at gene promoters

por Choi, Kyuha, Zhao, Xiaohui, Kelly, Krystyna A., Venn, Oliver, Higgins, James D., Yelina, Nataliya E., Hardcastle, Thomas J., Ziolkowski, Piotr A., Copenhaver, Gregory P., Franklin, F. Chris H., McVean, Gil, Henderson, Ian R.
Publicado 2013

Recombination Rate Heterogeneity within Arabidopsis Disease Resistance Genes

por Choi, Kyuha, Reinhard, Carsten, Serra, Heïdi, Ziolkowski, Piotr A., Underwood, Charles J., Zhao, Xiaohui, Hardcastle, Thomas J., Yelina, Nataliya E., Griffin, Catherine, Jackson, Matthew, Mézard, Christine, McVean, Gil, Copenhaver, Gregory P., Henderson, Ian R.
Publicado 2016

Nucleosomes and DNA methylation shape meiotic DSB frequency in Arabidopsis thaliana transposons and gene regulatory regions

por Choi, Kyuha, Zhao, Xiaohui, Tock, Andrew J., Lambing, Christophe, Underwood, Charles J., Hardcastle, Thomas J., Serra, Heïdi, Kim, Juhyun, Cho, Hyun Seob, Kim, Jaeil, Ziolkowski, Piotr A., Yelina, Nataliya E., Hwang, Ildoo, Martienssen, Robert A., Henderson, Ian R.
Publicado 2018