Cross-transmission Is Not the Source of New Mycobacterium abscessus Infections in a Multicenter Cohort of Cystic Fibrosis Patients

por Doyle, Ronan M, Rubio, Marc, Dixon, Garth, Hartley, John, Klein, Nigel, Coll, Pere, Harris, Kathryn A
Publicado 2020

Children With Cystic Fibrosis Are Infected With Multiple Subpopulations of Mycobacterium abscessus With Different Antimicrobial Resistance Profiles

por Shaw, Liam P, Doyle, Ronan M, Kavaliunaite, Ema, Spencer, Helen, Balloux, Francois, Dixon, Garth, Harris, Kathryn A
Publicado 2019

Differing Prevalence and Diversity of Bacterial Species in Fetal Membranes from Very Preterm and Term Labor

por Jones, Hannah E., Harris, Kathryn A., Azizia, Malika, Bank, Lindsay, Carpenter, Bernadette, Hartley, John C., Klein, Nigel, Peebles, Donald
Publicado 2009

Whole-Genome Sequencing and Epidemiological Analysis Do Not Provide Evidence for Cross-transmission of Mycobacterium abscessus in a Cohort of Pediatric Cystic Fibrosis Patients

por Harris, Kathryn A., Underwood, Anthony, Kenna, Dervla T. D., Brooks, Anthony, Kavaliunaite, Ema, Kapatai, Georgia, Tewolde, Rediat, Aurora, Paul, Dixon, Garth
Publicado 2015

From Theory to Practice: Translating Whole-Genome Sequencing (WGS) into the Clinic

por Balloux, Francois, Brønstad Brynildsrud, Ola, van Dorp, Lucy, Shaw, Liam P., Chen, Hongbin, Harris, Kathryn A., Wang, Hui, Eldholm, Vegard
Publicado 2018

Untargeted metagenomics protocol for the diagnosis of infection from CSF and tissue from sterile sites

por Atkinson, Laura, Lee, Jack CD., Lennon, Alexander, Shah, Divya, Storey, Nathaniel, Morfopoulou, Sofia, Harris, Kathryn A., Breuer, Judy, Brown, Julianne R.
Publicado 2023

Assessing the Accuracy of Quantitative Molecular Microbial Profiling

por O’Sullivan, Denise M., Laver, Thomas, Temisak, Sasithon, Redshaw, Nicholas, Harris, Kathryn A., Foy, Carole A., Studholme, David J., Huggett, Jim F.
Publicado 2014

Single base mutations in the nucleocapsid gene of SARS-CoV-2 affects amplification efficiency of sequence variants and may lead to assay failure

por Storey, Nathaniel, Brown, Julianne R, Pereira, Rui P A, O'Sullivan, Denise M, Huggett, Jim F, Williams, Rachel, Breuer, Judith, Harris, Kathryn A
Publicado 2021

Prevalence of Bloodstream Pathogens Is Higher in Neonatal Encephalopathy Cases vs. Controls Using a Novel Panel of Real-Time PCR Assays

por Tann, Cally J., Nkurunziza, Peter, Nakakeeto, Margaret, Oweka, James, Kurinczuk, Jennifer J., Were, Jackson, Nyombi, Natasha, Hughes, Peter, Willey, Barbara A., Elliott, Alison M., Robertson, Nicola J., Klein, Nigel, Harris, Kathryn A.
Publicado 2014

Evaluation of Matrix-Assisted Laser Desorption Ionization–Time of Flight Mass Spectrometry for Molecular Typing of Acinetobacter baumannii in Comparison with Orthogonal Methods

por Busby, Eloise J., Doyle, Ronan M., Leboreiro Babe, Clara, Harris, Kathryn A., Mack, Damien, Méndez-Cervantes, Gema, O’Sullivan, Denise M., Pang, Vicky, Sadouki, Zahra, Solanki, Priya, Huggett, Jim F., McHugh, Timothy D., Wey, Emmanuel Q.
Publicado 2023

Perinatal risk factors for neonatal encephalopathy: an unmatched case-control study

por Tann, Cally J, Nakakeeto, Margaret, Willey, Barbara A, Sewegaba, Margaret, Webb, Emily L, Oke, Ibby, Mutuuza, Emmanuel Derek, Peebles, Donald, Musoke, Margaret, Harris, Kathryn A, Sebire, Neil J, Klein, Nigel, Kurinczuk, Jennifer J, Elliott, Alison M, Robertson, Nicola J
Publicado 2018

Discordant bioinformatic predictions of antimicrobial resistance from whole-genome sequencing data of bacterial isolates: an inter-laboratory study

por Doyle, Ronan M., O'Sullivan, Denise M., Aller, Sean D., Bruchmann, Sebastian, Clark, Taane, Coello Pelegrin, Andreu, Cormican, Martin, Diez Benavente, Ernest, Ellington, Matthew J., McGrath, Elaine, Motro, Yair, Phuong Thuy Nguyen, Thi, Phelan, Jody, Shaw, Liam P., Stabler, Richard A., van Belkum, Alex, van Dorp, Lucy, Woodford, Neil, Moran-Gilad, Jacob, Huggett, Jim F., Harris, Kathryn A.
Publicado 2020

Detection of Mycobacterium tuberculosis complex DNA in CD34-positive peripheral blood mononuclear cells of asymptomatic tuberculosis contacts: an observational study

por Belay, Mulugeta, Tulu, Begna, Younis, Sidra, Jolliffe, David A, Tayachew, Dawit, Manwandu, Hana, Abozen, Tenagnework, Tirfie, Emawayish A, Tegegn, Metasebia, Zewude, Aboma, Forrest, Sally, Mayito, Jonathan, Huggett, Jim F, Jones, Gerwyn M, O'Sullivan, Denise M, Martineau, Henny M, Noursadeghi, Mahdad, Chandran, Aneesh, Harris, Kathryn A, Nikolayevskyy, Vlad, Demaret, Julie, Berg, Stefan, Vordermeier, Martin, Balcha, Taye T, Aseffa, Abraham, Ameni, Gobena, Abebe, Markos, Reece, Stephen T, Martineau, Adrian R
Publicado 2021

An inter-laboratory study to investigate the impact of the bioinformatics component on microbiome analysis using mock communities

por O’Sullivan, Denise M., Doyle, Ronan M., Temisak, Sasithon, Redshaw, Nicholas, Whale, Alexandra S., Logan, Grace, Huang, Jiabin, Fischer, Nicole, Amos, Gregory C. A., Preston, Mark D., Marchesi, Julian R., Wagner, Josef, Parkhill, Julian, Motro, Yair, Denise, Hubert, Finn, Robert D., Harris, Kathryn A., Kay, Gemma L., O’Grady, Justin, Ransom-Jones, Emma, Wu, Huihai, Laing, Emma, Studholme, David J., Benavente, Ernest Diez, Phelan, Jody, Clark, Taane G., Moran-Gilad, Jacob, Huggett, Jim F.
Publicado 2021