SeekDeep: single-base resolution de novo clustering for amplicon deep sequencing

por Hathaway, Nicholas J, Parobek, Christian M, Juliano, Jonathan J, Bailey, Jeffrey A
Publicado 2018

Differing Patterns of Selection and Geospatial Genetic Diversity within Two Leading Plasmodium vivax Candidate Vaccine Antigens

por Parobek, Christian M., Bailey, Jeffrey A., Hathaway, Nicholas J., Socheat, Duong, Rogers, William O., Juliano, Jonathan J.
Publicado 2014

Delayed referral for liver transplant evaluation worsens outcomes in chronic liver disease patients requiring inpatient transplant evaluation

por Cooper, Katherine M, Colletta, Alessandro, Hathaway, Nicholas J, Liu, Diana, Gonzalez, Daniella, Talat, Arslan, Barry, Curtis, Krishnarao, Anita, Mehta, Savant, Movahedi, Babak, Martins, Paulo N, Devuni, Deepika
Publicado 2023

A deep sequencing approach to estimate Plasmodium falciparum complexity of infection (COI) and explore apical membrane antigen 1 diversity

por Miller, Robin H., Hathaway, Nicholas J., Kharabora, Oksana, Mwandagalirwa, Kashamuka, Tshefu, Antoinette, Meshnick, Steven R., Taylor, Steve M., Juliano, Jonathan J., Stewart, V. Ann, Bailey, Jeffrey A.
Publicado 2017

Amplicon Sequencing as a Potential Surveillance Tool for Complexity of Infection and Drug Resistance Markers in Plasmodium falciparum Asymptomatic Infections( )

por Wamae, Kevin, Kimenyi, Kelvin M, Osoti, Victor, de Laurent, Zaydah R, Ndwiga, Leonard, Kharabora, Oksana, Hathaway, Nicholas J, Bailey, Jeffrey A, Juliano, Jonathan J, Bejon, Philip, Ochola-Oyier, Lynette Isabella
Publicado 2022

Plasmodium falciparum genetic variation of var2csa in the Democratic Republic of the Congo

por Verity, Robert, Hathaway, Nicholas J., Waltmann, Andreea, Doctor, Stephanie M., Watson, Oliver J., Patel, Jaymin C., Mwandagalirwa, Kashamuka, Tshefu, Antoinette K., Bailey, Jeffrey A., Ghani, Azra C., Juliano, Jonathan J., Meshnick, Steven R.
Publicado 2018

Sensitive, Highly Multiplexed Sequencing of Microhaplotypes From the Plasmodium falciparum Heterozygome

por Tessema, Sofonias K, Hathaway, Nicholas J, Teyssier, Noam B, Murphy, Maxwell, Chen, Anna, Aydemir, Ozkan, Duarte, Elias M, Simone, Wilson, Colborn, James, Saute, Francisco, Crawford, Emily, Aide, Pedro, Bailey, Jeffrey A, Greenhouse, Bryan
Publicado 2020

A deep sequencing tool for partitioning clearance rates following antimalarial treatment in polyclonal infections

por Mideo, Nicole, Bailey, Jeffrey A., Hathaway, Nicholas J., Ngasala, Billy, Saunders, David L., Lon, Chanthap, Kharabora, Oksana, Jamnik, Andrew, Balasubramanian, Sujata, Björkman, Anders, Mårtensson, Andreas, Meshnick, Steven R., Read, Andrew F., Juliano, Jonathan J.
Publicado 2016

A novel CRISPR-based malaria diagnostic capable of Plasmodium detection, species differentiation, and drug-resistance genotyping

por Cunningham, Clark H., Hennelly, Christopher M., Lin, Jessica T., Ubalee, Ratawan, Boyce, Ross M., Mulogo, Edgar M., Hathaway, Nicholas, Thwai, Kyaw L., Phanzu, Fernandine, Kalonji, Albert, Mwandagalirwa, Kashamuka, Tshefu, Antoinette, Juliano, Jonathan J., Parr, Jonathan B.
Publicado 2021

Sex-based differences in clearance of chronic Plasmodium falciparum infection

por Briggs, Jessica, Teyssier, Noam, Nankabirwa, Joaniter I, Rek, John, Jagannathan, Prasanna, Arinaitwe, Emmanuel, Bousema, Teun, Drakeley, Chris, Murray, Margaret, Crawford, Emily, Hathaway, Nicholas, Staedke, Sarah G, Smith, David, Rosenthal, Phillip J, Kamya, Moses, Dorsey, Grant, Rodriguez-Barraquer, Isabel, Greenhouse, Bryan
Publicado 2020

Plasmodium falciparum DHFR and DHPS Mutations Are Associated With HIV-1 Co-Infection and a Novel DHPS Mutation I504T Is Identified in Western Kenya

por Torrevillas, Brandi K., Garrison, Sarah M., McKeeken, Alexander J., Patel, Dharmeshkumar, Van Leuven, James T., Dizon, Nathaniel I., Rivas, Karina I., Hathaway, Nicholas J., Bailey, Jeffrey A., Waitumbi, John N., Kifude, Carolyne M., Oyieko, Janet, Stewart, V. Ann, Luckhart, Shirley
Publicado 2020

Characterization of triatomine bloodmeal sources using direct Sanger sequencing and amplicon deep sequencing methods

por Balasubramanian, Sujata, Curtis-Robles, Rachel, Chirra, Bhagath, Auckland, Lisa D., Mai, Alan, Bocanegra-Garcia, Virgilio, Clark, Patti, Clark, Wilhelmina, Cottingham, Mark, Fleurie, Geraldine, Johnson, Charles D., Metz, Richard P., Wang, Shichen, Hathaway, Nicholas J., Bailey, Jeffrey A., Hamer, Gabriel L., Hamer, Sarah A.
Publicado 2022

Surveillance for sulfadoxine-pyrimethamine resistant malaria parasites in the Lake and Southern Zones, Tanzania, using pooling and next-generation sequencing

por Ngondi, Jeremiah M., Ishengoma, Deus S., Doctor, Stephanie M., Thwai, Kyaw L., Keeler, Corinna, Mkude, Sigsbert, Munishi, Oresto M., Willilo, Ritha A., Lalji, Shabbir, Kaspar, Naomi, Kitojo, Chonge, Paxton, Lynn A., Hathaway, Nicholas J., Bailey, Jeffrey A., Juliano, Jonathan J., Meshnick, Steven R., Gutman, Julie
Publicado 2017

Deep Gene Sequence Cluster Analyses of Multi-Virus-Infected Mucosal Tissue Reveal Enhanced Transmission of Acute HIV-1

por Klein, Katja, Nankya, Immaculate, Nickel, Gabrielle, Ratcliff, Annette N., Meadows, Adam A. J., Hathaway, Nicholas, Bailey, Jeffrey A., Stieh, Daniel J., Cheeseman, Hannah M., Carias, Ann M., Lobritz, Michael A., Mann, Jamie F. S., Gao, Yong, Hope, Thomas J., Shattock, Robin J., Arts, Eric J.
Publicado 2021

Plasmodium falciparum is evolving to escape malaria rapid diagnostic tests in Ethiopia

por Feleke, Sindew M., Reichert, Emily N., Mohammed, Hussein, Brhane, Bokretsion G., Mekete, Kalkidan, Mamo, Hassen, Petros, Beyene, Solomon, Hiwot, Abate, Ebba, Hennelly, Chris, Denton, Madeline, Keeler, Corinna, Hathaway, Nicholas J., Juliano, Jonathan J., Bailey, Jeffrey A., Rogier, Eric, Cunningham, Jane, Aydemir, Ozkan, Parr, Jonathan B.
Publicado 2021

Global risk of selection and spread of Plasmodium falciparum histidine-rich protein 2 and 3 gene deletions

por Watson, Oliver J., Tran, Thu Nguyen-Anh, Zupko, Robert J, Symons, Tasmin, Thomson, Rebecca, Visser, Theodoor, Rumisha, Susan, Dzianach, Paulina A, Hathaway, Nicholas, Kim, Isaac, Juliano, Jonathan J., Bailey, Jeffrey A., Slater, Hannah, Okell, Lucy, Gething, Peter, Ghani, Azra, Boni, Maciej F, Parr, Jonathan B., Cunningham, Jane
Publicado 2023

Increased risk of low birth weight in women with placental malaria associated with P. falciparum VAR2CSA clade

por Patel, Jaymin C., Hathaway, Nicholas J., Parobek, Christian M., Thwai, Kyaw L., Madanitsa, Mwayiwawo, Khairallah, Carole, Kalilani-Phiri, Linda, Mwapasa, Victor, Massougbodji, Achille, Fievet, Nadine, Bailey, Jeffery A., ter Kuile, Feiko O., Deloron, Philippe, Engel, Stephanie M., Taylor, Steve M., Juliano, Jonathan J., Tuikue Ndam, Nicaise, Meshnick, Steven R.
Publicado 2017

Hypnozoite depletion in successive Plasmodium vivax relapses

por Noviyanti, Rintis, Carey-Ewend, Kelly, Trianty, Leily, Parobek, Christian, Puspitasari, Agatha Mia, Balasubramanian, Sujata, Park, Zackary, Hathaway, Nicholas, Utami, Retno A. S., Soebianto, Saraswati, Jeny, Jeny, Yudhaputri, Frilasita, Perkasa, Aditya, Coutrier, Farah N., Tirta, Yusrifar K., Ekawati, Lenny, Tjahyono, Bagus, Sutanto, Inge, Nelwan, Erni J., Sudoyo, Herawati, Baird, J. Kevin, Lin, Jessica T.
Publicado 2022

Targeted and whole-genome sequencing reveal a north-south divide in P. falciparum drug resistance markers and genetic structure in Mozambique

por da Silva, Clemente, Boene, Simone, Datta, Debayan, Rovira-Vallbona, Eduard, Aranda-Díaz, Andrés, Cisteró, Pau, Hathaway, Nicholas, Tessema, Sofonias, Chidimatembue, Arlindo, Matambisso, Glória, Nhama, Abel, Macete, Eusebio, Pujol, Arnau, Nhamussua, Lidia, Galatas, Beatriz, Guinovart, Caterina, Enosse, Sónia, De Carvalho, Eva, Rogier, Eric, Plucinski, Mateusz M., Colborn, James, Zulliger, Rose, Saifodine, Abuchahama, Alonso, Pedro L., Candrinho, Baltazar, Greenhouse, Bryan, Aide, Pedro, Saute, Francisco, Mayor, Alfredo
Publicado 2023

The impact of antimalarial resistance on the genetic structure of Plasmodium falciparum in the DRC

por Verity, Robert, Aydemir, Ozkan, Brazeau, Nicholas F., Watson, Oliver J., Hathaway, Nicholas J., Mwandagalirwa, Melchior Kashamuka, Marsh, Patrick W., Thwai, Kyaw, Fulton, Travis, Denton, Madeline, Morgan, Andrew P., Parr, Jonathan B., Tumwebaze, Patrick K., Conrad, Melissa, Rosenthal, Philip J., Ishengoma, Deus S., Ngondi, Jeremiah, Gutman, Julie, Mulenga, Modest, Norris, Douglas E., Moss, William J., Mensah, Benedicta A., Myers-Hansen, James L., Ghansah, Anita, Tshefu, Antoinette K., Ghani, Azra C., Meshnick, Steven R., Bailey, Jeffrey A., Juliano, Jonathan J.
Publicado 2020