Specificity in Computational Protein Design

por Havranek, James J.
Publicado 2010

Motif-directed redesign of enzyme specificity

por Borgo, Benjamin, Havranek, James J
Publicado 2014

Computer-aided design of a catalyst for Edman degradation utilizing substrate-assisted catalysis

por Borgo, Benjamin, Havranek, James J
Publicado 2015

Efficient minimization of multipole electrostatic potentials in torsion space

por Bodmer, Nicholas K., Havranek, James J.
Publicado 2018

Protein–DNA binding specificity predictions with structural models

por Morozov, Alexandre V., Havranek, James J., Baker, David, Siggia, Eric D.
Publicado 2005

Computational reprogramming of homing endonuclease specificity at multiple adjacent base pairs

por Ashworth, Justin, Taylor, Gregory K., Havranek, James J., Quadri, S. Arshiya, Stoddard, Barry L., Baker, David
Publicado 2010

Inhibition of Bacterial Virulence: Drug-Like Molecules Targeting the Salmonella enterica PhoP Response Regulator

por Tang, Yat T, Gao, Rong, Havranek, James J, Groisman, Eduardo A, Stock, Ann M, Marshall, Garland R
Publicado 2012

Redesign of the monomer–monomer interface of Cre recombinase yields an obligate heterotetrameric complex

por Zhang, Chi, Myers, Connie A., Qi, Zongtai, Mitra, Robi D., Corbo, Joseph C., Havranek, James J.
Publicado 2015

Exploitation of binding energy for catalysis and design

por Thyme, Summer B., Jarjour, Jordan, Takeuchi, Ryo, Havranek, James J., Ashworth, Justin, Scharenberg, Andrew M., Stoddard, Barry L., Baker, David
Publicado 2009

Quantitative profiling of selective Sox/POU pairing on hundreds of sequences in parallel by Coop-seq

por Chang, Yiming K., Srivastava, Yogesh, Hu, Caizhen, Joyce, Adam, Yang, Xiaoxiao, Zuo, Zheng, Havranek, James J., Stormo, Gary D., Jauch, Ralf
Publicado 2017

Rosetta in CAPRI rounds 13–19

por Fleishman, Sarel J, Corn, Jacob E, Strauch, Eva M, Whitehead, Tim A, Andre, Ingemar, Thompson, James, Havranek, James J, Das, Rhiju, Bradley, Philip, Baker, David
Publicado 2010

High-resolution Structural and Thermodynamic Analysis of Extreme Stabilization of Human Procarboxypeptidase by Computational Protein Design

por Dantas, Gautam, Corrent, Colin, Reichow, Steve L., Havranek, James J., Eletr, Ziad M., Isern, Nancy G., Kuhlman, Brian, Varani, Gabriele, Merritt, Ethan A., Baker, David
Publicado 2007

Serverification of Molecular Modeling Applications: The Rosetta Online Server That Includes Everyone (ROSIE)

por Lyskov, Sergey, Chou, Fang-Chieh, Conchúir, Shane Ó., Der, Bryan S., Drew, Kevin, Kuroda, Daisuke, Xu, Jianqing, Weitzner, Brian D., Renfrew, P. Douglas, Sripakdeevong, Parin, Borgo, Benjamin, Havranek, James J., Kuhlman, Brian, Kortemme, Tanja, Bonneau, Richard, Gray, Jeffrey J., Das, Rhiju
Publicado 2013