Genome Sequence of Acinetobacter baumannii Strain D36, an Antibiotic-Resistant Isolate from Lineage 2 of Global Clone 1

por Hamidian, Mohammad, Hawkey, Jane, Holt, Kathryn E., Hall, Ruth M.
Publicado 2015

Evolution of a clade of Acinetobacter baumannii global clone 1, lineage 1 via acquisition of carbapenem- and aminoglycoside-resistance genes and dispersion of ISAba1

por Hamidian, Mohammad, Hawkey, Jane, Wick, Ryan, Holt, Kathryn E., Hall, Ruth M.
Publicado 2019

Impact of insertion sequences on convergent evolution of Shigella species

por Hawkey, Jane, Monk, Jonathan M., Billman-Jacobe, Helen, Palsson, Bernhard, Holt, Kathryn E.
Publicado 2020

Epidemiology and genomic analysis of Klebsiella oxytoca from a single hospital network in Australia

por Stewart, James, Judd, Louise M., Jenney, Adam, Holt, Kathryn E., Wyres, Kelly L., Hawkey, Jane
Publicado 2022

Inferring demographic parameters in bacterial genomic data using Bayesian and hybrid phylogenetic methods

por Duchene, Sebastian, Duchene, David A., Geoghegan, Jemma L., Dyson, Zoe A., Hawkey, Jane, Holt, Kathryn E.
Publicado 2018

Evidence of microevolution of Salmonella Typhimurium during a series of egg-associated outbreaks linked to a single chicken farm

por Hawkey, Jane, Edwards, David J, Dimovski, Karolina, Hiley, Lester, Billman-Jacobe, Helen, Hogg, Geoff, Holt, Kathryn E
Publicado 2013

Genome Sequence of Acinetobacter baumannii Strain A1, an Early Example of Antibiotic-Resistant Global Clone 1

por Holt, Kathryn E., Hamidian, Mohammad, Kenyon, Johanna J., Wynn, Matthew T., Hawkey, Jane, Pickard, Derek, Hall, Ruth M.
Publicado 2015

ISMapper: identifying transposase insertion sites in bacterial genomes from short read sequence data

por Hawkey, Jane, Hamidian, Mohammad, Wick, Ryan R., Edwards, David J., Billman-Jacobe, Helen, Hall, Ruth M., Holt, Kathryn E.
Publicado 2015

Z/I1 Hybrid Virulence Plasmids Carrying Antimicrobial Resistance genes in S. Typhimurium from Australian Food Animal Production

por Wyrsch, Ethan R., Hawkey, Jane, Judd, Louise M., Haites, Ruth, Holt, Kathryn E., Djordjevic, Steven P., Billman-Jacobe, Helen
Publicado 2019

Trycycler: consensus long-read assemblies for bacterial genomes

por Wick, Ryan R., Judd, Louise M., Cerdeira, Louise T., Hawkey, Jane, Méric, Guillaume, Vezina, Ben, Wyres, Kelly L., Holt, Kathryn E.
Publicado 2021

Genome-scale rates of evolutionary change in bacteria

por Duchêne, Sebastian, Holt, Kathryn E., Weill, François-Xavier, Le Hello, Simon, Hawkey, Jane, Edwards, David J., Fourment, Mathieu, Holmes, Edward C.
Publicado 2016

ESBL plasmids in Klebsiella pneumoniae: diversity, transmission and contribution to infection burden in the hospital setting

por Hawkey, Jane, Wyres, Kelly L., Judd, Louise M., Harshegyi, Taylor, Blakeway, Luke, Wick, Ryan R., Jenney, Adam W. J., Holt, Kathryn E.
Publicado 2022

Within–patient and global evolutionary dynamics of Klebsiella pneumoniae ST17

por Hetland, Marit A. K., Hawkey, Jane, Bernhoff, Eva, Bakksjø, Ragna-Johanne, Kaspersen, Håkon, Rettedal, Siren I., Sundsfjord, Arnfinn, Holt, Kathryn E., Löhr, Iren H.
Publicado 2023

Species interactions constrain adaptation and preserve ecological stability in an experimental microbial community

por Barber, Jake N., Nicholson, Luke C., Woods, Laura C., Judd, Louise M., Sezmis, Aysha L., Hawkey, Jane, Holt, Kathryn E., McDonald, Michael J.
Publicado 2022

Linear plasmids in Klebsiella and other Enterobacteriaceae

por Hawkey, Jane, Cottingham, Hugh, Tokolyi, Alex, Wick, Ryan R., Judd, Louise M., Cerdeira, Louise, de Oliveira Garcia, Doroti, Wyres, Kelly L., Holt, Kathryn E.
Publicado 2022

Bactabolize is a tool for high-throughput generation of bacterial strain-specific metabolic models

por Vezina, Ben, Watts, Stephen C, Hawkey, Jane, Cooper, Helena B, Judd, Louise M, Jenney, Adam WJ, Monk, Jonathan M, Holt, Kathryn E, Wyres, Kelly L
Publicado 2023

A curated collection of Klebsiella metabolic models reveals variable substrate usage and gene essentiality

por Hawkey, Jane, Vezina, Ben, Monk, Jonathan M., Judd, Louise M., Harshegyi, Taylor, López-Fernández, Sebastián, Rodrigues, Carla, Brisse, Sylvain, Holt, Kathryn E., Wyres, Kelly L.
Publicado 2022

Evolution of carbapenem resistance in Acinetobacter baumannii during a prolonged infection

por Hawkey, Jane, Ascher, David B., Judd, Louise M., Wick, Ryan R., Kostoulias, Xenia, Cleland, Heather, Spelman, Denis W., Padiglione, Alex, Peleg, Anton Y., Holt, Kathryn E.
Publicado 2018

Pandora: nucleotide-resolution bacterial pan-genomics with reference graphs

por Colquhoun, Rachel M., Hall, Michael B., Lima, Leandro, Roberts, Leah W., Malone, Kerri M., Hunt, Martin, Letcher, Brice, Hawkey, Jane, George, Sophie, Pankhurst, Louise, Iqbal, Zamin
Publicado 2021

Emergence and rapid global dissemination of CTX-M-15-associated Klebsiella pneumoniae strain ST307

por Wyres, Kelly L, Hawkey, Jane, Hetland, Marit A K, Fostervold, Aasmund, Wick, Ryan R, Judd, Louise M, Hamidian, Mohammad, Howden, Benjamin P, Löhr, Iren H, Holt, Kathryn E
Publicado 2019