Three-dimensional genome architecture and emerging technologies: looping in disease

por Mishra, Arpit, Hawkins, R. David
Publicado 2017

Candidate silencer elements for the human and mouse genomes

por Doni Jayavelu, Naresh, Jajodia, Ajay, Mishra, Arpit, Hawkins, R. David
Publicado 2020

cChIP-seq: a robust small-scale method for investigation of histone modifications

por Valensisi, Cristina, Liao, Jo Ling, Andrus, Colin, Battle, Stephanie L., Hawkins, R. David
Publicado 2015

Optimized detection of transcription factor-binding sites in ChIP-seq experiments

por Elo, Laura L., Kallio, Aleksi, Laajala, Teemu D., Hawkins, R. David, Korpelainen, Eija, Aittokallio, Tero
Publicado 2012

Extracting a low-dimensional description of multiple gene expression datasets reveals a potential driver for tumor-associated stroma in ovarian cancer

por Celik, Safiye, Logsdon, Benjamin A., Battle, Stephanie, Drescher, Charles W., Rendi, Mara, Hawkins, R. David, Lee, Su-In
Publicado 2016

Single-cell analysis of transcriptome and DNA methylome in human oocyte maturation

por Yu, Bo, Doni Jayavelu, Naresh, Battle, Stephanie L., Mar, Jessica C., Schimmel, Timothy, Cohen, Jacques, Hawkins, R. David
Publicado 2020

Comprehensive identification and analysis of human accelerated regulatory DNA

por Gittelman, Rachel M., Hun, Enna, Ay, Ferhat, Madeoy, Jennifer, Pennacchio, Len, Noble, William S., Hawkins, R. David, Akey, Joshua M.
Publicado 2015

Transcriptomes of an Array of Chicken Ovary, Intestinal, and Immune Cells and Tissues

por Overbey, Eliah G., Ng, Theros T., Catini, Pietro, Griggs, Lisa M., Stewart, Paul, Tkalcic, Suzana, Hawkins, R. David, Drechsler, Yvonne
Publicado 2021

Identification of global regulators of T-helper cell lineage specification

por Kanduri, Kartiek, Tripathi, Subhash, Larjo, Antti, Mannerström, Henrik, Ullah, Ubaid, Lund, Riikka, Hawkins, R. David, Ren, Bing, Lähdesmäki, Harri, Lahesmaa, Riitta
Publicado 2015

Genome-wide, Single-Cell DNA Methylomics Reveals Increased Non-CpG Methylation during Human Oocyte Maturation

por Yu, Bo, Dong, Xiao, Gravina, Silvia, Kartal, Önder, Schimmel, Timothy, Cohen, Jacques, Tortoriello, Drew, Zody, Raifa, Hawkins, R. David, Vijg, Jan
Publicado 2017

Large Scale Gene Expression Profiles of Regenerating Inner Ear Sensory Epithelia

por Hawkins, R. David, Bashiardes, Stavros, Powder, Kara E., Sajan, Samin A., Bhonagiri, Veena, Alvarado, David M., Speck, Judith, Warchol, Mark E., Lovett, Michael
Publicado 2007

Lysine-Specific Demethylase 1 (LSD1) epigenetically controls osteoblast differentiation

por Rummukainen, Petri, Tarkkonen, Kati, Dudakovic, Amel, Al-Majidi, Rana, Nieminen-Pihala, Vappu, Valensisi, Cristina, Hawkins, R. David, van Wijnen, Andre J., Kiviranta, Riku
Publicado 2022

Methylome Analysis of Human Bone Marrow MSCs Reveals Extensive Age- and Culture-Induced Changes at Distal Regulatory Elements

por Pasumarthy, Kalyan K., Doni Jayavelu, Naresh, Kilpinen, Lotta, Andrus, Colin, Battle, Stephanie L., Korhonen, Matti, Lehenkari, Petri, Lund, Riikka, Laitinen, Saara, Hawkins, R. David
Publicado 2017

Muscle-specific CRISPR/Cas9 dystrophin gene editing ameliorates pathophysiology in a mouse model for Duchenne muscular dystrophy

por Bengtsson, Niclas E., Hall, John K., Odom, Guy L., Phelps, Michael P., Andrus, Colin R., Hawkins, R. David, Hauschka, Stephen D., Chamberlain, Joel R., Chamberlain, Jeffrey S.
Publicado 2017

Corrigendum: Muscle-specific CRISPR/Cas9 dystrophin gene editing ameliorates pathophysiology in a mouse model for Duchenne muscular dystrophy

por Bengtsson, Niclas E., Hall, John K., Odom, Guy L., Phelps, Michael P., Andrus, Colin R., Hawkins, R. David, Hauschka, Stephen D., Chamberlain, Joel R., Chamberlain, Jeffrey S.
Publicado 2017

DNA methylation dynamics during embryonic development and postnatal maturation of the mouse auditory sensory epithelium

por Yizhar-Barnea, Ofer, Valensisi, Cristina, Jayavelu, Naresh Doni, Kishore, Kamal, Andrus, Colin, Koffler-Brill, Tal, Ushakov, Kathy, Perl, Kobi, Noy, Yael, Bhonker, Yoni, Pelizzola, Mattia, Hawkins, R. David, Avraham, Karen B.
Publicado 2018

Enhancer Chromatin and 3D Genome Architecture Changes from Naive to Primed Human Embryonic Stem Cell States

por Battle, Stephanie L., Doni Jayavelu, Naresh, Azad, Robert N., Hesson, Jennifer, Ahmed, Faria N., Overbey, Eliah G., Zoller, Joseph A., Mathieu, Julie, Ruohola-Baker, Hannele, Ware, Carol B., Hawkins, R. David
Publicado 2019

Sumoylation of the human histone H4 tail inhibits p300-mediated transcription by RNA polymerase II in cellular extracts

por Leonen, Calvin Jon A, Shimada, Miho, Weller, Caroline E, Nakadai, Tomoyoshi, Hsu, Peter L, Tyson, Elizabeth L, Mishra, Arpit, Shelton, Patrick MM, Sadilek, Martin, Hawkins, R David, Zheng, Ning, Roeder, Robert G, Chatterjee, Champak
Publicado 2021

Epigenetic Silencing of the Key Antioxidant Enzyme Catalase in Karyotypically Abnormal Human Pluripotent Stem Cells

por Konki, Mikko, Pasumarthy, Kalyan, Malonzo, Maia, Sainio, Annele, Valensisi, Cristina, Söderström, Mirva, Emani, Maheswara Reddy, Stubb, Aki, Närvä, Elisa, Ghimire, Bishwa, Laiho, Asta, Järveläinen, Hannu, Lahesmaa, Riitta, Lähdesmäki, Harri, Hawkins, R. David, Lund, Riikka J.
Publicado 2016

Functional analysis of a chromosomal deletion associated with myelodysplastic syndromes using isogenic human induced pluripotent stem cells

por Kotini, Andriana G, Chang, Chan-Jung, Boussaad, Ibrahim, Delrow, Jeffrey J, Dolezal, Emily K, Nagulapally, Abhinav B, Perna, Fabiana, Fishbein, Gregory A, Klimek, Virginia M, Hawkins, R David, Huangfu, Danwei, Murry, Charles E, Graubert, Timothy, Nimer, Stephen D, Papapetrou, Eirini P
Publicado 2015