Benchmark analysis of algorithms for determining and quantifying full-length mRNA splice forms from RNA-seq data

por Hayer, Katharina E., Pizarro, Angel, Lahens, Nicholas F., Hogenesch, John B., Grant, Gregory R.
Publicado 2015

Poor quality Vβ recombination signal sequences stochastically enforce TCRβ allelic exclusion

por Wu, Glendon S., Yang-Iott, Katherine S., Klink, Morgann A., Hayer, Katharina E., Lee, Kyutae D., Bassing, Craig H.
Publicado 2020

Promotion of growth factor signaling as a critical function of β-catenin during HCC progression

por Kim, Eunsun, Lisby, Amanda, Ma, Connie, Lo, Nathanael, Ehmer, Ursula, Hayer, Katharina E., Furth, Emma E., Viatour, Patrick
Publicado 2019

DRUMMER—rapid detection of RNA modifications through comparative nanopore sequencing

por Abebe, Jonathan S, Price, Alexander M, Hayer, Katharina E, Mohr, Ian, Weitzman, Matthew D, Wilson, Angus C, Depledge, Daniel P
Publicado 2022

A comparison of Illumina and Ion Torrent sequencing platforms in the context of differential gene expression

por Lahens, Nicholas F., Ricciotti, Emanuela, Smirnova, Olga, Toorens, Erik, Kim, Eun Ji, Baruzzo, Giacomo, Hayer, Katharina E., Ganguly, Tapan, Schug, Jonathan, Grant, Gregory R.
Publicado 2017

A Cyfip2-Dependent Excitatory Interneuron Pathway Establishes the Innate Startle Threshold

por Marsden, Kurt C., Jain, Roshan A., Wolman, Marc A., Echeverry, Fabio A., Nelson, Jessica C., Hayer, Katharina E., Miltenberg, Ben, Pereda, Alberto E., Granato, Michael
Publicado 2018

Adenovirus prevents dsRNA formation by promoting efficient splicing of viral RNA

por Price, Alexander M, Steinbock, Robert T, Di, Chao, Hayer, Katharina E, Li, Yize, Herrmann, Christin, Parenti, Nicholas A, Whelan, Jillian N, Weiss, Susan R, Weitzman, Matthew D
Publicado 2021

Direct long-read RNA sequencing identifies a subset of questionable exitrons likely arising from reverse transcription artifacts

por Schulz, Laura, Torres-Diz, Manuel, Cortés-López, Mariela, Hayer, Katharina E., Asnani, Mukta, Tasian, Sarah K., Barash, Yoseph, Sotillo, Elena, Zarnack, Kathi, König, Julian, Thomas-Tikhonenko, Andrei
Publicado 2021

FBXW7β isoform drives transcriptional activation of the proinflammatory TNF cluster in human pro-B cells

por Yang, Scarlett Y., Hayer, Katharina E., Fazelinia, Hossein, Spruce, Lynn A., Asnani, Mukta, Black, Kathryn L., Naqvi, Ammar S., Pillai, Vinodh, Barash, Yoseph, Elenitoba-Johnson, Kojo S. J., Thomas-Tikhonenko, Andrei
Publicado 2022

DNA double-strand breaks induce H2Ax phosphorylation domains in a contact-dependent manner

por Collins, Patrick L., Purman, Caitlin, Porter, Sofia I., Nganga, Vincent, Saini, Ankita, Hayer, Katharina E., Gurewitz, Greer L., Sleckman, Barry P., Bednarski, Jeffrey J., Bassing, Craig H., Oltz, Eugene M.
Publicado 2020

Adenovirus-mediated ubiquitination alters protein-RNA binding and aids viral RNA processing

por Herrmann, Christin, Dybas, Joseph M., Liddle, Jennifer C., Price, Alexander M, Hayer, Katharina E., Lauman, Richard, Purman, Caitlin E., Charman, Matthew, Kim, Eui Tae, Garcia, Benjamin A, Weitzman, Matthew D
Publicado 2020

Rb family proteins enforce the homeostasis of quiescent hematopoietic stem cells by repressing Socs3 expression

por Kim, Eunsun, Cheng, Ying, Bolton-Gillespie, Elisabeth, Cai, Xiongwei, Ma, Connie, Tarangelo, Amy, Le, Linh, Jambhekar, Madhumita, Raman, Pichai, Hayer, Katharina E., Wertheim, Gerald, Speck, Nancy A., Tong, Wei, Viatour, Patrick
Publicado 2017

Novel viral splicing events and open reading frames revealed by long-read direct RNA sequencing of adenovirus transcripts

por Price, Alexander M., Steinbock, Robert T., Lauman, Richard, Charman, Matthew, Hayer, Katharina E., Kumar, Namrata, Halko, Edwin, Lum, Krystal K., Wei, Monica, Wilson, Angus C., Garcia, Benjamin A., Depledge, Daniel P., Weitzman, Matthew D.
Publicado 2022

Direct RNA sequencing reveals m(6)A modifications on adenovirus RNA are necessary for efficient splicing

por Price, Alexander M., Hayer, Katharina E., McIntyre, Alexa B. R., Gokhale, Nandan S., Abebe, Jonathan S., Della Fera, Ashley N., Mason, Christopher E., Horner, Stacy M., Wilson, Angus C., Depledge, Daniel P., Weitzman, Matthew D.
Publicado 2020

duper is a null mutation of Cryptochrome 1 in Syrian hamsters

por Lee, Yin Yeng, Cal-Kayitmazbatir, Sibel, Francey, Lauren J., Bahiru, Michael Seifu, Hayer, Katharina E., Wu, Gang, Zeller, Molly J., Roberts, Robyn, Speers, James, Koshalek, Justin, Berres, Mark E., Bittman, Eric L., Hogenesch, John B.
Publicado 2022

Aberrant splicing in B-cell acute lymphoblastic leukemia

por Black, Kathryn L, Naqvi, Ammar S, Asnani, Mukta, Hayer, Katharina E, Yang, Scarlett Y, Gillespie, Elisabeth, Bagashev, Asen, Pillai, Vinodh, Tasian, Sarah K, Gazzara, Matthew R, Carroll, Martin, Taylor, Deanne, Lynch, Kristen W, Barash, Yoseph, Thomas-Tikhonenko, Andrei
Publicado 2018

Aberrant splicing in B-cell acute lymphoblastic leukemia

por Black, Kathryn L, Naqvi, Ammar S, Asnani, Mukta, Hayer, Katharina E, Yang, Scarlett Y, Gillespie, Elisabeth, Bagashev, Asen, Pillai, Vinodh, Tasian, Sarah K, Gazzara, Matthew R, Carroll, Martin, Taylor, Deanne, Lynch, Kristen W, Barash, Yoseph, Thomas-Tikhonenko, Andrei
Publicado 2019

Intestinal transit amplifying cells require METTL3 for growth factor signaling, KRAS expression, and cell survival

por Danan, Charles H., Naughton, Kaitlyn E., Hayer, Katharina E., Vellappan, Sangeevan, McMillan, Emily A., Zhou, Yusen, Matsuda, Rina, Nettleford, Shaneice K., Katada, Kay, Parham, Louis R., Ma, Xianghui, Chowdhury, Afrah, Wilkins, Benjamin J., Shah, Premal, Weitzman, Matthew D., Hamilton, Kathryn E.
Publicado 2023

Retention of CD19 intron 2 contributes to CART-19 resistance in leukemias with subclonal frameshift mutations in CD19

por Asnani, Mukta, Hayer, Katharina E., Naqvi, Ammar S., Zheng, Sisi, Yang, Scarlett Y., Oldridge, Derek, Ibrahim, Fadia, Maragkakis, Manolis, Gazzara, Matthew R., Black, Kathryn L., Bagashev, Asen, Taylor, Deanne, Mourelatos, Zissimos, Grupp, Stephan A., Barrett, David, Maris, John M., Sotillo, Elena, Barash, Yoseph, Thomas-Tikhonenko, Andrei
Publicado 2019

Antigen glycosylation regulates efficacy of CAR T cells targeting CD19

por Heard, Amanda, Landmann, Jack H., Hansen, Ava R., Papadopolou, Alkmini, Hsu, Yu-Sung, Selli, Mehmet Emrah, Warrington, John M., Lattin, John, Chang, Jufang, Ha, Helen, Haug-Kroeper, Martina, Doray, Balraj, Gill, Saar, Ruella, Marco, Hayer, Katharina E., Weitzman, Matthew D., Green, Abby M., Fluhrer, Regina, Singh, Nathan
Publicado 2022