Improved Tumor Purity Metrics in Next-generation Sequencing for Clinical Practice: The Integrated Interpretation of Neoplastic Cellularity and Sequencing Results (IINCaSe) Approach

por Patel, Nirali M., Jo, Heejoon, Eberhard, David A., Yin, Xiaoying, Hayward, Michele C., Stein, Matthew K., Hayes, David Neil, Grilley-Olson, Juneko E.
Publicado 2019

Concomitant Radiotherapy and Chemotherapy for High-Risk Nonmelanoma Skin Carcinomas of the Head and Neck

por Apisarnthanarax, Smith, Dhruva, Nirav, Ardeshirpour, Farhad, Tepper, Joel E., Shores, Carol G., Rosenman, Julian G., Shockley, William W., Hayward, Michele C., Hayes, D. Neil
Publicado 2011

SCISSOR: a framework for identifying structural changes in RNA transcripts

por Choi, Hyo Young, Jo, Heejoon, Zhao, Xiaobei, Hoadley, Katherine A., Newman, Scott, Holt, Jeremiah, Hayward, Michele C., Love, Michael I., Marron, J. S., Hayes, D. Neil
Publicado 2021

SWISS MADE: Standardized WithIn Class Sum of Squares to Evaluate Methodologies and Dataset Elements

por Cabanski, Christopher R., Qi, Yuan, Yin, Xiaoying, Bair, Eric, Hayward, Michele C., Fan, Cheng, Li, Jianying, Wilkerson, Matthew D., Marron, J. S., Perou, Charles M., Hayes, D. Neil
Publicado 2010

UNMASC: tumor-only variant calling with unmatched normal controls

por Little, Paul, Jo, Heejoon, Hoyle, Alan, Mazul, Angela, Zhao, Xiaobei, Salazar, Ashley H, Farquhar, Douglas, Sheth, Siddharth, Masood, Maheer, Hayward, Michele C, Parker, Joel S, Hoadley, Katherine A, Zevallos, Jose, Hayes, D Neil
Publicado 2021

CRTC1/MAML2 directs a PGC-1α-IGF-1 circuit that confers vulnerability to PPARγ inhibition

por Musicant, Adele M., Parag-Sharma, Kshitij, Gong, Weida, Sengupta, Monideepa, Chatterjee, Arindam, Henry, Erin C., Tsai, Yi-Hsuan, Hayward, Michele C., Sheth, Siddharth, Betancourt, Renee, Hackman, Trevor G., Padilla, Ricardo J., Parker, Joel S., Giudice, Jimena, Flaveny, Colin A., Hayes, David N., Amelio, Antonio L.
Publicado 2021

Differential Pathogenesis of Lung Adenocarcinoma Subtypes Involving Sequence Mutations, Copy Number, Chromosomal Instability, and Methylation

por Wilkerson, Matthew D., Yin, Xiaoying, Walter, Vonn, Zhao, Ni, Cabanski, Christopher R., Hayward, Michele C., Miller, C. Ryan, Socinski, Mark A., Parsons, Alden M., Thorne, Leigh B., Haithcock, Benjamin E., Veeramachaneni, Nirmal K., Funkhouser, William K., Randell, Scott H., Bernard, Philip S., Perou, Charles M., Hayes, D. Neil
Publicado 2012

Noncanonical HPV carcinogenesis drives radiosensitization of head and neck tumors

por Schrank, Travis P., Kothari, Aditi, Weir, William H., Stepp, Wesley H., Rehmani, Hina, Liu, Xinyi, Wang, Xiaowei, Sewell, Andrew, Li, Xue, Tasoulas, Jason, Kim, Sulgi, Yarbrough, Gray, Xie, Yue, Flamand, Yael, Marur, Shanthi, Hayward, Michele C., Wu, Di, Burtness, Barbara, Anderson, Karen S., Baldwin, Albert S., Yarbrough, Wendell G., Issaeva, Natalia
Publicado 2023

Correction to: Fibroblast growth factor receptor 3 alterations and response to immune checkpoint inhibition in metastatic urothelial cancer: a real world experience

por Rose, Tracy L., Weir, William H., Mayhew, Gregory M., Shibata, Yoichiro, Eulitt, Patrick, Uronis, Joshua M., Zhou, Mi, Nielsen, Matthew, Smith, Angela B., Woods, Michael, Hayward, Michele C., Salazar, Ashley H., Milowsky, Matthew I., Wobker, Sara E., McGinty, Katrina, Millburn, Michael V., Eisner, Joel R., Kim, William Y.
Publicado 2022

Tumor Cell Extrinsic Synaptogyrin 3 Expression as a Diagnostic and Prognostic Biomarker in Head and Neck Cancer

por Murphy, Ryan M., Tasoulas, Jason, Porrello, Alessandro, Carper, Miranda B., Tsai, Yi-Hsuan, Coffey, Alisha R., Kumar, Sunil, Zeng, Peter YF., Schrank, Travis P., Midkiff, Bentley R., Cohen, Stephanie, Salazar, Ashley H., Hayward, Michele C., Hayes, D. Neil, Olshan, Andrew, Gupta, Gaorav P., Nichols, Anthony C., Yarbrough, Wendell G., Pecot, Chad V., Amelio, Antonio L.
Publicado 2022

Combined Targeted DNA Sequencing in Non-Small Cell Lung Cancer (NSCLC) Using UNCseq and NGScopy, and RNA Sequencing Using UNCqeR for the Detection of Genetic Aberrations in NSCLC

por Zhao, Xiaobei, Wang, Anyou, Walter, Vonn, Patel, Nirali M., Eberhard, David A., Hayward, Michele C., Salazar, Ashley H., Jo, Heejoon, Soloway, Matthew G., Wilkerson, Matthew D., Parker, Joel S., Yin, Xiaoying, Zhang, Guosheng, Siegel, Marni B., Rosson, Gary B., Earp, H. Shelton, Sharpless, Norman E., Gulley, Margaret L., Weck, Karen E., Hayes, D. Neil, Moschos, Stergios J.
Publicado 2015

Factor XIIIA—expressing inflammatory monocytes promote lung squamous cancer through fibrin cross-linking

por Porrello, Alessandro, Leslie, Patrick L., Harrison, Emily B., Gorentla, Balachandra K., Kattula, Sravya, Ghosh, Subrata K., Azam, Salma H., Holtzhausen, Alisha, Chao, Yvonne L., Hayward, Michele C., Waugh, Trent A., Bae, Sanggyu, Godfrey, Virginia, Randell, Scott H., Oderup, Cecilia, Makowski, Liza, Weiss, Jared, Wilkerson, Matthew D., Hayes, D. Neil, Earp, H. Shelton, Baldwin, Albert S., Wolberg, Alisa S., Pecot, Chad V.
Publicado 2018

Molecular Subtypes in Head and Neck Cancer Exhibit Distinct Patterns of Chromosomal Gain and Loss of Canonical Cancer Genes

por Walter, Vonn, Yin, Xiaoying, Wilkerson, Matthew D., Cabanski, Christopher R., Zhao, Ni, Du, Ying, Ang, Mei Kim, Hayward, Michele C., Salazar, Ashley H., Hoadley, Katherine A., Fritchie, Karen, Sailey, Charles G., Weissler, Mark C., Shockley, William W., Zanation, Adam M., Hackman, Trevor, Thorne, Leigh B., Funkhouser, William D., Muldrew, Kenneth L., Olshan, Andrew F., Randell, Scott H., Wright, Fred A., Shores, Carol G., Hayes, D. Neil
Publicado 2013

Correction: Molecular Subtypes in Head and Neck Cancer Exhibit Distinct Patterns of Chromosomal Gain and Loss of Canonical Cancer Genes

por Walter, Vonn, Yin, Xiaoying, Wilkerson, Matthew D., Cabanski, Christopher R., Zhao, Ni, Du, Ying, Ang, Mei Kim, Hayward, Michele C., Salazar, Ashley H., Hoadley, Katherine A., Fritchie, Karen, Sailey, Charles J., Weissler, Mark C., Shockley, William W., Zanation, Adam M., Hackman, Trevor, Thorne, Leigh B., Funkhouser, William D., Muldrew, Kenneth L., Olshan, Andrew F., Randell, Scott H., Wright, Fred A., Shores, Carol G., Hayes, D. Neil
Publicado 2013

Correction: Molecular Subtypes in Head and Neck Cancer Exhibit Distinct Patterns of Chromosomal Gain and Loss of Canonical Cancer Genes

por Walter, Vonn, Yin, Xiaoying, Wilkerson, Matthew D., Cabanski, Christopher R., Zhao, Ni, Du, Ying, Ang, Mei Kim, Hayward, Michele C., Salazar, Ashley H., Hoadley, Katherine A., Fritchie, Karen, Sailey, Charles G., Weissler, Mark C., Shockley, William W., Zanation, Adam M., Hackman, Trevor, Thorne, Leigh B., Funkhouser, William D., Muldrew, Kenneth L., Olshan, Andrew F., Randell, Scott H., Wright, Fred A., Shores, Carol G., Hayes, D. Neil
Publicado 2014

Enhancing Next‐Generation Sequencing‐Guided Cancer Care Through Cognitive Computing

por Patel, Nirali M., Michelini, Vanessa V., Snell, Jeff M., Balu, Saianand, Hoyle, Alan P., Parker, Joel S., Hayward, Michele C., Eberhard, David A., Salazar, Ashley H., McNeillie, Patrick, Xu, Jia, Huettner, Claudia S., Koyama, Takahiko, Utro, Filippo, Rhrissorrakrai, Kahn, Norel, Raquel, Bilal, Erhan, Royyuru, Ajay, Parida, Laxmi, Earp, H. Shelton, Grilley‐Olson, Juneko E., Hayes, D. Neil, Harvey, Stephen J., Sharpless, Norman E., Kim, William Y.
Publicado 2017

Correction: Molecular Subtypes in Head and Neck Cancer Exhibit Distinct Patterns of Chromosomal Gain and Loss of Canonical Cancer Genes

por Walter, Vonn, Yin, Xiaoying, Wilkerson, Matthew D., Cabanski, Christopher R., Zhao, Ni, Du, Ying, Ang, Mei Kim, Hayward, Michele C., Salazar, Ashley H., Hoadley, Katherine A., Fritchie, Karen, Sailey, Charles J., Weissler, Mark C., Shockley, William W., Zanation, Adam M., Hackman, Trevor, Thorne, Leigh B., Funkhouser, William D., Muldrew, Kenneth L., Olshan, Andrew F., Randell, Scott H., Wright, Fred A., Shores, Carol G., Hayes, D. Neil
Publicado 2018

The Prognostic Significance of Low-Frequency Somatic Mutations in Metastatic Cutaneous Melanoma

por Zhao, Xiaobei, Little, Paul, Hoyle, Alan P., Pegna, Guillaume J., Hayward, Michele C., Ivanova, Anastasia, Parker, Joel S., Marron, David L., Soloway, Matthew G., Jo, Heejoon, Salazar, Ashley H., Papakonstantinou, Michael P., Bouchard, Deeanna M., Jefferys, Stuart R., Hoadley, Katherine A., Ollila, David W., Frank, Jill S., Thomas, Nancy E., Googe, Paul B., Ezzell, Ashley J., Collichio, Frances A., Lee, Carrie B., Earp, H. Shelton, Sharpless, Norman E., Hugo, Willy, Wilmott, James S., Quek, Camelia, Waddell, Nicola, Johansson, Peter A., Thompson, John F., Hayward, Nicholas K., Mann, Graham J., Lo, Roger S., Johnson, Douglas B., Scolyer, Richard A., Hayes, D. Neil, Moschos, Stergios J.
Publicado 2019