A Streamlined Approach to Antibody Novel Germline Allele Prediction and Validation

por Wendel, Ben S., He, Chenfeng, Crompton, Peter D., Pierce, Susan K., Jiang, Ning
Publicado 2017

Cellular senescence triggers intracellular acidification and lysosomal pH alkalinized via ATP6AP2 attenuation in breast cancer cells

por Li, Wei, Kawaguchi, Kosuke, Tanaka, Sunao, He, Chenfeng, Maeshima, Yurina, Suzuki, Eiji, Toi, Masakazu
Publicado 2023

Bringing machine learning to research on intellectual and developmental disabilities: taking inspiration from neurological diseases

por Gupta, Chirag, Chandrashekar, Pramod, Jin, Ting, He, Chenfeng, Khullar, Saniya, Chang, Qiang, Wang, Daifeng
Publicado 2022

GMOL: An Interactive Tool for 3D Genome Structure Visualization

por Nowotny, Jackson, Wells, Avery, Oluwadare, Oluwatosin, Xu, Lingfei, Cao, Renzhi, Trieu, Tuan, He, Chenfeng, Cheng, Jianlin
Publicado 2016

Immune Repertoire Sequencing Using Molecular Identifiers Enables Accurate Clonality Discovery and Clone Size Quantification

por Ma, Ke-Yue, He, Chenfeng, Wendel, Ben S., Williams, Chad M., Xiao, Jun, Yang, Hui, Jiang, Ning
Publicado 2018

Serum amyloid alpha 1-2 are not required for liver inflammation in the 4T1 murine breast cancer model

por He, Chenfeng, Konishi, Riyo, Harata, Ayano, Nakamura, Yuki, Mizuno, Rin, Yoda, Mayuko, Toi, Masakazu, Kawaguchi, Kosuke, Kawaoka, Shinpei
Publicado 2023

High-throughput determination of the antigen specificities of T cell receptors in single cells

por Zhang, Shu-Qi, Ma, Ke-Yue, Schonnesen, Alexandra A., Zhang, Mingliang, He, Chenfeng, Sun, Eric, Williams, Chad M., Jia, Weiping, Jiang, Ning
Publicado 2018

MiRmat: Mature microRNA Sequence Prediction

por He, Chenfeng, Li, Ying-Xin, Zhang, Guangxin, Gu, Zuguang, Yang, Rong, Li, Jie, Lu, Zhi John, Zhou, Zhi-Hua, Zhang, Chenyu, Wang, Jin
Publicado 2012

General Model for Treating Short-Range Electrostatic Penetration in a Molecular Mechanics Force Field

por Wang, Qiantao, Rackers, Joshua A., He, Chenfeng, Qi, Rui, Narth, Christophe, Lagardere, Louis, Gresh, Nohad, Ponder, Jay W., Piquemal, Jean-Philip, Ren, Pengyu
Publicado 2015

Normalized Synergy Predicts That CD8 Co-Receptor Contribution to T Cell Receptor (TCR) and pMHC Binding Decreases As TCR Affinity Increases in Human Viral-Specific T Cells

por Williams, Chad M., Schonnesen, Alexandra A., Zhang, Shu-Qi, Ma, Ke-Yue, He, Chenfeng, Yamamoto, Tori, Eckhardt, S. Gail, Klebanoff, Christopher A., Jiang, Ning
Publicado 2017

DeepGAMI: deep biologically guided auxiliary learning for multimodal integration and imputation to improve genotype–phenotype prediction

por Chandrashekar, Pramod Bharadwaj, Alatkar, Sayali, Wang, Jiebiao, Hoffman, Gabriel E., He, Chenfeng, Jin, Ting, Khullar, Saniya, Bendl, Jaroslav, Fullard, John F., Roussos, Panos, Wang, Daifeng
Publicado 2023

BOMA, a machine-learning framework for comparative gene expression analysis across brains and organoids

por He, Chenfeng, Kalafut, Noah Cohen, Sandoval, Soraya O., Risgaard, Ryan, Sirois, Carissa L., Yang, Chen, Khullar, Saniya, Suzuki, Marin, Huang, Xiang, Chang, Qiang, Zhao, Xinyu, Sousa, Andre M.M., Wang, Daifeng
Publicado 2023

Accurate immune repertoire sequencing reveals malaria infection driven antibody lineage diversification in young children

por Wendel, Ben S., He, Chenfeng, Qu, Mingjuan, Wu, Di, Hernandez, Stefany M., Ma, Ke-Yue, Liu, Eugene W., Xiao, Jun, Crompton, Peter D., Pierce, Susan K., Ren, Pengyu, Chen, Keke, Jiang, Ning
Publicado 2017

Murine breast cancers disorganize the liver transcriptome in a zonated manner

por Vandenbon, Alexis, Mizuno, Rin, Konishi, Riyo, Onishi, Masaya, Masuda, Kyoko, Kobayashi, Yuka, Kawamoto, Hiroshi, Suzuki, Ayako, He, Chenfeng, Nakamura, Yuki, Kawaguchi, Kosuke, Toi, Masakazu, Shimizu, Masahito, Tanaka, Yasuhito, Suzuki, Yutaka, Kawaoka, Shinpei
Publicado 2023

Lineage Tracking the Generation of T Regulatory Cells From Microbial Activated T Effector Cells in Naïve Mice

por Zhu, Kun, He, Chenfeng, Liu, Si-Qi, Qu, Mingjuan, Xie, Tao, Yang, Xiaofeng, Lei, Lei, Zhou, Xiaobo, Shi, Lin, Zhang, Dan, Cheng, Yanbin, Sun, Yae, Zheng, Huiqiang, Shen, Xiaonan, Li, Qijing, Jiang, Ning, Zhang, Baojun
Publicado 2020

Transcriptome and TCR Repertoire Measurements of CXCR3(+) T Follicular Helper Cells Within HIV-Infected Human Lymph Nodes

por He, Chenfeng, Malone, Michael J., Wendel, Ben S., Ma, Ke-Yue, Del Alcazar, Daniel, Weiner, David B., De Jager, Philip L., Del Río-Estrada, Perla M., Ablanedo-Terrazas, Yuria, Reyes-Terán, Gustavo, Su, Laura F., Jiang, Ning
Publicado 2022

Mapping the Lineage Relationship between CXCR5(+) and CXCR5(−) CD4(+) T Cells in HIV-Infected Human Lymph Nodes

por Del Alcazar, Daniel, Wang, Yifeng, He, Chenfeng, Wendel, Ben S., Del Río-Estrada, Perla M., Lin, Jerome, Ablanedo-Terrazas, Yuria, Malone, Michael J., Hernandez, Stefany M., Frank, Ian, Naji, Ali, Reyes-Terán, Gustavo, Jiang, Ning, Su, Laura F.
Publicado 2019