Screening for PPAR Responsive Regulatory Modules in Cancer

por Heinäniemi, Merja, Carlberg, Carsten
Publicado 2008

Deregulation of the non-coding genome in leukemia

por Teppo, Susanna, Heinäniemi, Merja, Lohi, Olli
Publicado 2017

Meta-analysis of primary target genes of peroxisome proliferator-activated receptors

por Heinäniemi, Merja, Uski, J Oskari, Degenhardt, Tatjana, Carlberg, Carsten
Publicado 2007

Time-Resolved Expression Profiling of the Nuclear Receptor Superfamily in Human Adipogenesis

por Lahnalampi, Mari, Heinäniemi, Merja, Sinkkonen, Lasse, Wabitsch, Martin, Carlberg, Carsten
Publicado 2010

Cyclical regulation of the insulin-like growth factor binding protein 3 gene in response to 1α,25-dihydroxyvitamin D(3)

por Malinen, Marjo, Ryynänen, Jussi, Heinäniemi, Merja, Väisänen, Sami, Carlberg, Carsten
Publicado 2011

Genome-wide analysis of primary microRNA expression using H3K36me3 ChIP-seq data

por Turunen, Tanja, Hernández de Sande, Ana, Pölönen, Petri, Heinäniemi, Merja
Publicado 2021

Integrated analysis of transcript-level regulation of metabolism reveals disease-relevant nodes of the human metabolic network

por Galhardo, Mafalda, Sinkkonen, Lasse, Berninger, Philipp, Lin, Jake, Sauter, Thomas, Heinäniemi, Merja
Publicado 2014

Transcriptomics profiling of human SGBS adipogenesis

por Galhardo, Mafalda, Sinkkonen, Lasse, Berninger, Philipp, Lin, Jake, Sauter, Thomas, Heinäniemi, Merja
Publicado 2014

ChIP-seq profiling of the active chromatin marker H3K4me3 and PPARγ, CEBPα and LXR target genes in human SGBS adipocytes

por Galhardo, Mafalda, Sinkkonen, Lasse, Berninger, Philipp, Lin, Jake, Sauter, Thomas, Heinäniemi, Merja
Publicado 2014

Dataset integration identifies transcriptional regulation of microRNA genes by PPARγ in differentiating mouse 3T3-L1 adipocytes

por John, Elisabeth, Wienecke-Baldacchino, Anke, Liivrand, Maria, Heinäniemi, Merja, Carlberg, Carsten, Sinkkonen, Lasse
Publicado 2012

Semisupervised Generative Autoencoder for Single-Cell Data

por Trong, Trung Ngo, Mehtonen, Juha, González, Gerardo, Kramer, Roger, Hautamäki, Ville, Heinäniemi, Merja
Publicado 2020

Endothelial cell differentiation is encompassed by changes in long range interactions between inactive chromatin regions

por Niskanen, Henri, Tuszynska, Irina, Zaborowski, Rafal, Heinäniemi, Merja, Ylä-Herttuala, Seppo, Wilczynski, Bartek, Kaikkonen, Minna U
Publicado 2018

Prenatal Metformin Exposure in a Maternal High Fat Diet Mouse Model Alters the Transcriptome and Modifies the Metabolic Responses of the Offspring

por Salomäki, Henriikka, Heinäniemi, Merja, Vähätalo, Laura H., Ailanen, Liisa, Eerola, Kim, Ruohonen, Suvi T., Pesonen, Ullamari, Koulu, Markku
Publicado 2014

IGF2BP3 Associates with Proliferative Phenotype and Prognostic Features in B-Cell Acute Lymphoblastic Leukemia

por Mäkinen, Artturi, Nikkilä, Atte, Haapaniemi, Teppo, Oksa, Laura, Mehtonen, Juha, Vänskä, Matti, Heinäniemi, Merja, Paavonen, Timo, Lohi, Olli
Publicado 2021

Integrated metabolic modelling reveals cell-type specific epigenetic control points of the macrophage metabolic network

por Pacheco, Maria Pires, John, Elisabeth, Kaoma, Tony, Heinäniemi, Merja, Nicot, Nathalie, Vallar, Laurent, Bueb, Jean-Luc, Sinkkonen, Lasse, Sauter, Thomas
Publicado 2015

Analysis of primary microRNA loci from nascent transcriptomes reveals regulatory domains governed by chromatin architecture

por Bouvy-Liivrand, Maria, Hernández de Sande, Ana, Pölönen, Petri, Mehtonen, Juha, Vuorenmaa, Tapio, Niskanen, Henri, Sinkkonen, Lasse, Kaikkonen, Minna Unelma, Heinäniemi, Merja
Publicado 2017

Analysis of primary microRNA loci from nascent transcriptomes reveals regulatory domains governed by chromatin architecture

por Bouvy-Liivrand, Maria, Hernández de Sande, Ana, Pölönen, Petri, Mehtonen, Juha, Vuorenmaa, Tapio, Niskanen, Henri, Sinkkonen, Lasse, Kaikkonen, Minna Unelma, Heinäniemi, Merja
Publicado 2017

Data-driven characterization of molecular phenotypes across heterogeneous sample collections

por Mehtonen, Juha, Pölönen, Petri, Häyrynen, Sergei, Dufva, Olli, Lin, Jake, Liuksiala, Thomas, Granberg, Kirsi, Lohi, Olli, Hautamäki, Ville, Nykter, Matti, Heinäniemi, Merja
Publicado 2019

Gene pair signatures in cell type transcriptomes reveal lineage control

por Heinäniemi, Merja, Nykter, Matti, Kramer, Roger, Wienecke-Baldacchino, Anke, Sinkkonen, Lasse, Zhou, Joseph Xu, Kreisberg, Richard, Kauffman, Stuart A., Huang, Sui, Shmulevich, Ilya
Publicado 2013

Arginine Methyltransferase PRMT7 Deregulates Expression of RUNX1 Target Genes in T-Cell Acute Lymphoblastic Leukemia

por Oksa, Laura, Mäkinen, Artturi, Nikkilä, Atte, Hyvärinen, Noora, Laukkanen, Saara, Rokka, Anne, Haapaniemi, Pekka, Seki, Masafumi, Takita, Junko, Kauko, Otto, Heinäniemi, Merja, Lohi, Olli
Publicado 2022