Factors Influencing Instructors’ Adoption and Continued Use of Computing Science Technologies: A Case Study in the Context of Cell Collective

por Song, Changsoo, Helikar, Resa, Smith, Wendy M., Helikar, Tomáš
Publicado 2023

The Need for Research-Grade Systems Modeling Technologies for Life Science Education

por Helikar, Tomáš
Publicado 2021

ChemChains: a platform for simulation and analysis of biochemical networks aimed to laboratory scientists

por Helikar, Tomáš, Rogers, Jim A
Publicado 2009

Ergodic Sets as Cell Phenotype of Budding Yeast Cell Cycle

por Todd, Robert G., Helikar, Tomáš
Publicado 2012

Simulation of Stimulation: Cytokine Dosage and Cell Cycle Crosstalk Driving Timing-Dependent T Cell Differentiation

por Barberis, Matteo, Helikar, Tomáš, Verbruggen, Paul
Publicado 2018

Recent applications of quantitative systems pharmacology and machine learning models across diseases

por Aghamiri, Sara Sadat, Amin, Rada, Helikar, Tomáš
Publicado 2021

Identification of potential tissue-specific cancer biomarkers and development of cancer versus normal genomic classifiers

por Mohammed, Akram, Biegert, Greyson, Adamec, Jiri, Helikar, Tomáš
Publicado 2017

CancerDiscover: an integrative pipeline for cancer biomarker and cancer class prediction from high-throughput sequencing data

por Mohammed, Akram, Biegert, Greyson, Adamec, Jiri, Helikar, Tomáš
Publicado 2017

Simulating a Computational Biological Model, Rather Than Reading, Elicits Changes in Brain Activity during Biological Reasoning

por Clark, Caron A. C., Helikar, Tomáš, Dauer, Joseph
Publicado 2020

Identification of Biologically Essential Nodes via Determinative Power in Logical Models of Cellular Processes

por Pentzien, Trevor, Puniya, Bhanwar L., Helikar, Tomáš, Matache, Mihaela T.
Publicado 2018

A multiscale mechanistic model of human dendritic cells for in-silico investigation of immune responses and novel therapeutics discovery

por Aghamiri, Sara Sadat, Puniya, Bhanwar Lal, Amin, Rada, Helikar, Tomáš
Publicado 2023

Teaching Metabolism in Upper-Division Undergraduate Biochemistry Courses using Online Computational Systems and Dynamical Models Improves Student Performance

por Booth, Christine S., Song, Changsoo, Howell, Michelle E., Rasquinha, Achilles, Saska, Aleš, Helikar, Resa, Sikich, Sharmin M., Couch, Brian A., van Dijk, Karin, Roston, Rebecca L., Helikar, Tomáš
Publicado 2021

Systems Perturbation Analysis of a Large-Scale Signal Transduction Model Reveals Potentially Influential Candidates for Cancer Therapeutics

por Puniya, Bhanwar Lal, Allen, Laura, Hochfelder, Colleen, Majumder, Mahbubul, Helikar, Tomáš
Publicado 2016

Sensitivity analysis of biological Boolean networks using information fusion based on nonadditive set functions

por Kochi, Naomi, Helikar, Tomáš, Allen, Laura, Rogers, Jim A, Wang, Zhenyuan, Matache, Mihaela T
Publicado 2014

Automated inference of Boolean models from molecular interaction maps using CaSQ

por Aghamiri, Sara Sadat, Singh, Vidisha, Naldi, Aurélien, Helikar, Tomáš, Soliman, Sylvain, Niarakis, Anna
Publicado 2020

A Mechanistic Computational Model Reveals That Plasticity of CD4(+) T Cell Differentiation Is a Function of Cytokine Composition and Dosage

por Puniya, Bhanwar Lal, Todd, Robert G., Mohammed, Akram, Brown, Deborah M., Barberis, Matteo, Helikar, Tomáš
Publicado 2018

Arginine Catabolism and Polyamine Biosynthesis Pathway Disparities Within Francisella tularensis Subpopulations

por Yue, Yinshi, Puniya, Bhanwar Lal, Helikar, Tomáš, Girardo, Benjamin, Hinrichs, Steven H., Larson, Marilynn A.
Publicado 2022

Logical Modeling and Dynamical Analysis of Cellular Networks

por Abou-Jaoudé, Wassim, Traynard, Pauline, Monteiro, Pedro T., Saez-Rodriguez, Julio, Helikar, Tomáš, Thieffry, Denis, Chaouiya, Claudine
Publicado 2016

Visualizing the Invisible: A Guide to Designing, Printing, and Incorporating Dynamic 3D Molecular Models to Teach Structure–Function Relationships

por Howell, Michelle E., van Dijk, Karin, Booth, Christine S., Helikar, Tomáš, Couch, Brian A., Roston, Rebecca L.
Publicado 2018

Differences in Blood-Derived Francisella tularensis Type B Strains from Clinical Cases of Tularemia

por Larson, Marilynn A., Abdalhamid, Baha, Puniya, Bhanwar Lal, Helikar, Tomáš, Kelley, David W., Iwen, Peter C.
Publicado 2020