bpRNA-align: improved RNA secondary structure global alignment for comparing and clustering RNA structures

por Lasher, Brittany, Hendrix, David A.
Publicado 2023

Predicting Drosha and Dicer Cleavage Sites with DeepMirCut

por Bell, Jimmy, Hendrix, David A.
Publicado 2022

Improving deep models of protein-coding potential with a Fourier-transform architecture and machine translation task

por Valencia, Joseph D., Hendrix, David A.
Publicado 2023

Improving deep models of protein-coding potential with a Fourier-transform architecture and machine translation task

por Valencia, Joseph D., Hendrix, David A.
Publicado 2023

miRTRAP, a computational method for the systematic identification of miRNAs from high throughput sequencing data

por Hendrix, David, Levine, Michael, Shi, Weiyang
Publicado 2010

HopBase: a unified resource for Humulus genomics

por Hill, Steven T., Sudarsanam, Ramcharan, Henning, John, Hendrix, David
Publicado 2017

bpRNA: large-scale automated annotation and analysis of RNA secondary structure

por Danaee, Padideh, Rouches, Mason, Wiley, Michelle, Deng, Dezhong, Huang, Liang, Hendrix, David
Publicado 2018

A deep recurrent neural network discovers complex biological rules to decipher RNA protein-coding potential

por Hill, Steven T, Kuintzle, Rachael, Teegarden, Amy, Merrill, Erich, Danaee, Padideh, Hendrix, David A
Publicado 2018

miRWoods: Enhanced precursor detection and stacked random forests for the sensitive detection of microRNAs

por Bell, Jimmy, Larson, Maureen, Kutzler, Michelle, Bionaz, Massimo, Löhr, Christiane V., Hendrix, David
Publicado 2019

Discovery and Visualization of Age-Dependent Patterns in the Diurnal Transcriptome of Drosophila

por Sebastian, Benjamin, Fey, Rosalyn M., Morar, Patrick, Lasher, Brittany, Giebultowicz, Jadwiga M., Hendrix, David A.
Publicado 2022

LinearFold: linear-time approximate RNA folding by 5'-to-3' dynamic programming and beam search

por Huang, Liang, Zhang, He, Deng, Dezhong, Zhao, Kai, Liu, Kaibo, Hendrix, David A, Mathews, David H
Publicado 2019

An improved assembly of the “Cascade” hop (Humulus lupulus) genome uncovers signatures of molecular evolution and refines time of divergence estimates for the Cannabaceae family...

por Padgitt-Cobb, Lillian K, Pitra, Nicholi J, Matthews, Paul D, Henning, John A, Hendrix, David A
Publicado 2022

Circadian deep sequencing reveals stress-response genes that adopt robust rhythmic expression during aging

por Kuintzle, Rachael C., Chow, Eileen S., Westby, Tara N., Gvakharia, Barbara O., Giebultowicz, Jadwiga M., Hendrix, David A
Publicado 2017

Age-dependent effects of blue light exposure on lifespan, neurodegeneration, and mitochondria physiology in Drosophila melanogaster

por Song, Yujuan, Yang, Jun, Law, Alexander D., Hendrix, David A., Kretzschmar, Doris, Robinson, Matthew, Giebultowicz, Jadwiga M.
Publicado 2022

In Vivo Characterization of an AHR-Dependent Long Noncoding RNA Required for Proper Sox9b Expression

por Garcia, Gloria R., Goodale, Britton C., Wiley, Michelle W., La Du, Jane K., Hendrix, David A., Tanguay, Robert L.
Publicado 2017

Lactate dehydrogenase expression modulates longevity and neurodegeneration in Drosophila melanogaster

por Long, Dani M., Frame, Ariel K., Reardon, Patrick N., Cumming, Robert C., Hendrix, David A., Kretzschmar, Doris, Giebultowicz, Jadwiga M.
Publicado 2020

Transcription Factor CTIP1/ BCL11A Regulates Epidermal Differentiation and Lipid Metabolism During Skin Development

por Li, Shan, Teegarden, Amy, Bauer, Emily M., Choi, Jaewoo, Messaddeq, Nadia, Hendrix, David A., Ganguli-Indra, Gitali, Leid, Mark, Indra, Arup K.
Publicado 2017

RNA structure and multiple weak interactions balance the interplay between RNA binding and phase separation of SARS-CoV-2 nucleocapsid

por Estelle, Aidan B, Forsythe, Heather M, Yu, Zhen, Hughes, Kaitlyn, Lasher, Brittany, Allen, Patrick, Reardon, Patrick N, Hendrix, David A, Barbar, Elisar J
Publicado 2023

Systematic identification of recognition motifs for the hub protein LC8

por Jespersen, Nathan, Estelle, Aidan, Waugh, Nathan, Davey, Norman E, Blikstad, Cecilia, Ammon, York-Christoph, Akhmanova, Anna, Ivarsson, Ylva, Hendrix, David A, Barbar, Elisar
Publicado 2019

Chronic blue light leads to accelerated aging in Drosophila by impairing energy metabolism and neurotransmitter levels

por Yang, Jun, Song, Yujuan, Law, Alexander D., Rogan, Conner J., Shimoda, Kelsey, Djukovic, Danijel, Anderson, Jeffrey C., Kretzschmar, Doris, Hendrix, David A., Giebultowicz, Jadwiga M.
Publicado 2022