Towards Translational Epidemiology: Next-Generation Sequencing and Phylogeography as Epidemiological Mainstays

por Hepp, Crystal M.
Publicado 2019

Contrasted patterns of evolution of the LINE-1 retrotransposon in perissodactyls: the history of a LINE-1 extinction

por Sookdeo, Akash, Hepp, Crystal M., Boissinot, Stéphane
Publicado 2018

Revisiting the evolution of mouse LINE-1 in the genomic era

por Sookdeo, Akash, Hepp, Crystal M, McClure, Marcella A, Boissinot, Stéphane
Publicado 2013

Sample pooling methods for efficient pathogen screening: Practical implications

por Furstenau, Tara N., Cocking, Jill H., Hepp, Crystal M., Fofanov, Viacheslav Y.
Publicado 2020

Identifying genetic relationships among tarsier populations in the islands of Bunaken National Park and mainland Sulawesi

por Sumampow, Thalita Christiani Pingkan, Shekelle, Myron, Beier, Paul, Walker, Faith M., Hepp, Crystal M.
Publicado 2020

Range-wide genetic analysis of Dermacentor variabilis and its Francisella-like endosymbionts demonstrates phylogeographic concordance between both taxa

por Kaufman, Emily L., Stone, Nathan E., Scoles, Glen A., Hepp, Crystal M., Busch, Joseph D., Wagner, David M.
Publicado 2018

Complete mitochondrial genome of Onchocerca lupi (Nematoda, Onchocercidae)

por Roe, Chandler C., Urbanz, Jennifer, Andrews, Lela, Verocai, Guilherme G., Engelthaler, David M., Hepp, Crystal M., Sahl, Jason W.
Publicado 2021

Characterization of neonatal opioid withdrawal syndrome in Arizona from 2010-2017

por Eaves, Emery R., Barber, Jarrett, Whealy, Ryann, Clancey, Sara A., Wright, Rita, Cocking, Jill Hager, Spadafino, Joseph, Hepp, Crystal M.
Publicado 2021

Guano exposed: Impact of aerobic conditions on bat fecal microbiota

por Fofanov, Viacheslav Y., Furstenau, Tara N., Sanchez, Daniel, Hepp, Crystal M., Cocking, Jill, Sobek, Colin, Pagel, Nicole, Walker, Faith, Chambers, Carol L.
Publicado 2018

Health Disparities and Converging Epidemics in Jail Populations: Protocol for a Mixed-Methods Study

por Trotter II, Robert T, Camplain, Ricky, Eaves, Emery R, Fofanov, Viacheslav Y, Dmitrieva, Natalia O, Hepp, Crystal M, Warren, Meghan, Barrios, Brianna A, Pagel, Nicole, Mayer, Alyssa, Baldwin, Julie A
Publicado 2018

Temporal phylogeography of Yersinia pestis in Madagascar: Insights into the long-term maintenance of plague

por Vogler, Amy J., Andrianaivoarimanana, Voahangy, Telfer, Sandra, Hall, Carina M., Sahl, Jason W., Hepp, Crystal M., Centner, Heather, Andersen, Genevieve, Birdsell, Dawn N., Rahalison, Lila, Nottingham, Roxanne, Keim, Paul, Wagner, David M., Rajerison, Minoarisoa
Publicado 2017

Genotyping of Burkholderia mallei from an Outbreak of Glanders in Bahrain Suggests Multiple Introduction Events

por Scholz, Holger C., Pearson, Talima, Hornstra, Heidie, Projahn, Michaela, Terzioglu, Rahime, Wernery, Renate, Georgi, Enrico, Riehm, Julia M., Wagner, David M., Keim, Paul S., Joseph, Marina, Johnson, Bobby, Kinne, Joerg, Jose, Shanti, Hepp, Crystal M., Witte, Angela, Wernery, Ulrich
Publicado 2014

Biting midges (Diptera: Ceratopogonidae) as putative vectors of zoonotic Onchocerca lupi (Nematoda: Onchocercidae) in northern Arizona and New Mexico, southwestern United States

por Roe, Chandler C., Holiday, Olivia, Upshaw-Bia, Kelly, Benally, Gaven, Williamson, Charles H. D., Urbanz, Jennifer, Verocai, Guilherme G., Ridenour, Chase L., Nottingham, Roxanne, Ford, Morgan A., Lake, Derek P., Kennedy, Theodore A., Hepp, Crystal M., Sahl, Jason W.
Publicado 2023

Local Population Structure and Patterns of Western Hemisphere Dispersal for Coccidioides spp., the Fungal Cause of Valley Fever

por Engelthaler, David M., Roe, Chandler C., Hepp, Crystal M., Teixeira, Marcus, Driebe, Elizabeth M., Schupp, James M., Gade, Lalitha, Waddell, Victor, Komatsu, Kenneth, Arathoon, Eduardo, Logemann, Heidi, Thompson, George R., Chiller, Tom, Barker, Bridget, Keim, Paul, Litvintseva, Anastasia P.
Publicado 2016

Dating the Cryptococcus gattii Dispersal to the North American Pacific Northwest

por Roe, Chandler C., Bowers, Jolene, Oltean, Hanna, DeBess, Emilio, Dufresne, Philippe J., McBurney, Scott, Overy, David P., Wanke, Bodo, Lysen, Colleen, Chiller, Tom, Meyer, Wieland, Thompson, George R., Lockhart, Shawn R., Hepp, Crystal M., Engelthaler, David M.
Publicado 2018

One health genomic surveillance and response to a university-based outbreak of the SARS-CoV-2 Delta AY.25 lineage, Arizona, 2021

por Yaglom, Hayley D., Maurer, Matthew, Collins, Brooke, Hojnacki, Jacob, Monroy-Nieto, Juan, Bowers, Jolene R., Packard, Samuel, Erickson, Daryn E., Barrand, Zachary A., Simmons, Kyle M., Brock, Breezy N., Lim, Efrem S., Smith, Sandra, Hepp, Crystal M., Engelthaler, David M.
Publicado 2022

Unique Genomic Epidemiology of COVID-19 in the White Mountain Apache Tribe, April to August 2020, Arizona

por Bowers, Jolene R., Yaglom, Hayley D., Hepp, Crystal M., Pfeiffer, Ashlyn, Jasso-Selles, Daniel, Bratsch, Nicole, Nashio, J. T., Folkerts, Megan, Wilbur, Sara M., French, Chris, Lemmer, Darrin, Fitzpatrick, Kathryn, Huynh, Trung, Komatsu, Kenneth, McAuley, James B., Close, Ryan, Engelthaler, David M.
Publicado 2023

Phylogenetic analysis of West Nile Virus in Maricopa County, Arizona: Evidence for dynamic behavior of strains in two major lineages in the American Southwest

por Hepp, Crystal M., Cocking, Jill Hager, Valentine, Michael, Young, Steven J., Damian, Dan, Samuels-Crow, Kimberly E., Sheridan, Krystal, Fofanov, Viacheslav Y., Furstenau, Tara N., Busch, Joseph D., Erickson, Daryn E., Lancione, Ryan C., Smith, Kirk, Will, James, Townsend, John, Keim, Paul S., Engelthaler, David M.
Publicado 2018

Using Whole Genome Analysis to Examine Recombination across Diverse Sequence Types of Staphylococcus aureus

por Driebe, Elizabeth M., Sahl, Jason W., Roe, Chandler, Bowers, Jolene R., Schupp, James M., Gillece, John D., Kelley, Erin, Price, Lance B., Pearson, Talima R., Hepp, Crystal M., Brzoska, Pius M., Cummings, Craig A., Furtado, Manohar R., Andersen, Paal S., Stegger, Marc, Engelthaler, David M., Keim, Paul S.
Publicado 2015

Reproducibly sampling SARS-CoV-2 genomes across time, geography, and viral diversity

por Bolyen, Evan, Dillon, Matthew R., Bokulich, Nicholas A., Ladner, Jason T., Larsen, Brendan B., Hepp, Crystal M., Lemmer, Darrin, Sahl, Jason W., Sanchez, Andrew, Holdgraf, Chris, Sewell, Chris, Choudhury, Aakash G., Stachurski, John, McKay, Matthew, Simard, Anthony, Engelthaler, David M., Worobey, Michael, Keim, Paul, Caporaso, J. Gregory
Publicado 2020