A pan-genome-based machine learning approach for predicting antimicrobial resistance activities of the Escherichia coli strains

por Her, Hsuan-Lin, Wu, Yu-Wei
Publicado 2018

Metadensity: a background-aware python pipeline for summarizing CLIP signals on various transcriptomic sites

por Her, Hsuan-Lin, Boyle, Evan, Yeo, Gene W
Publicado 2022

PangenomeNet: a pan-genome-based network reveals functional modules on antimicrobial resistome for Escherichia coli strains

por Her, Hsuan-Lin, Lin, Po-Ting, Wu, Yu-Wei
Publicado 2021

Skipper analysis of eCLIP datasets enables sensitive detection of constrained translation factor binding sites

por Boyle, Evan A., Her, Hsuan-Lin, Mueller, Jasmine R., Naritomi, Jack T., Nguyen, Grady G., Yeo, Gene W.
Publicado 2023

Inferring a spatial code of cell-cell interactions across a whole animal body

por Armingol, Erick, Ghaddar, Abbas, Joshi, Chintan J., Baghdassarian, Hratch, Shamie, Isaac, Chan, Jason, Her, Hsuan-Lin, Berhanu, Samuel, Dar, Anushka, Rodriguez-Armstrong, Fabiola, Yang, Olivia, O’Rourke, Eyleen J., Lewis, Nathan E.
Publicado 2022

Multiplexed transcriptome discovery of RNA-binding protein binding sites by antibody-barcode eCLIP

por Lorenz, Daniel A., Her, Hsuan-Lin, Shen, Kylie A., Rothamel, Katie, Hutt, Kasey R., Nojadera, Allan C., Bruns, Stephanie C., Manakov, Sergei A., Yee, Brian A., Chapman, Karen B., Yeo, Gene W.
Publicado 2022

Discovery and functional interrogation of SARS-CoV-2 protein-RNA interactions

por Xiang, Joy S., Mueller, Jasmine R., Luo, En-Ching, Yee, Brian A., Schafer, Danielle, Schmok, Jonathan C., Tan, Frederick E., Rothamel, Katherine, McVicar, Rachael N., Kwong, Elizabeth M., Jones, Krysten L., Her, Hsuan-Lin, Chen, Chun-Yuan, Vu, Anthony Q., Jin, Wenhao, Park, Samuel S., Le, Phuong, Brannan, Kristopher W., Kofman, Eric R., Li, Yanhua, Tankka, Alexandra T., Dong, Kevin D., Song, Yan, Carlin, Aaron F., Van Nostrand, Eric L., Leibel, Sandra L., Yeo, Gene W.
Publicado 2022

Discovery and functional interrogation of SARS-CoV-2 protein-RNA interactions

por Xiang, Joy S., Mueller, Jasmine R., Luo, En-Ching, Yee, Brian A., Schafer, Danielle, Schmok, Jonathan C., Tan, Frederick E., Rothamel, Katherine, McVicar, Rachael N., Kwong, Elizabeth M., Croker, Ben A., Jones, Krysten L., Her, Hsuan-Lin, Chen, Chun-Yuan, Vu, Anthony Q., Jin, Wenhao, Park, Samuel S., Le, Phuong, Brannan, Kristopher W., Kofman, Eric R., Li, Yanhua, Tankka, Alexandra T., Dong, Kevin D., Song, Yan, Clark, Alex E., Carlin, Aaron F., Van Nostrand, Eric L., Leibel, Sandra L., Yeo, Gene W.
Publicado 2022