webPRC: the Profile Comparer for alignment-based searching of public domain databases

por Brandt, Bernd W., Heringa, Jaap
Publicado 2009

Scooby-domain: prediction of globular domains in protein sequence

por George, Richard A., Lin, Kuang, Heringa, Jaap
Publicado 2005

Sequence comparison by sequence harmony identifies subtype-specific functional sites

por Pirovano, Walter, Feenstra, K. Anton, Heringa, Jaap
Publicado 2006

The meaning of alignment: lessons from structural diversity

por Pirovano, Walter, Feenstra, K Anton, Heringa, Jaap
Publicado 2008

PhyloPars: estimation of missing parameter values using phylogeny

por Bruggeman, Jorn, Heringa, Jaap, Brandt, Bernd W.
Publicado 2009

Multi-Harmony: detecting functional specificity from sequence alignment

por Brandt, Bernd W., Feenstra, K. Anton, Heringa, Jaap
Publicado 2010

Sequence harmony: detecting functional specificity from alignments

por Feenstra, K. Anton, Pirovano, Walter, Krab, Klaas, Heringa, Jaap
Publicado 2007

SEQATOMS: a web tool for identifying missing regions in PDB in sequence context

por Brandt, Bernd W., Heringa, Jaap, Leunissen, Jack A. M.
Publicado 2008

Quantifying the Displacement of Mismatches in Multiple Sequence Alignment Benchmarks

por Bawono, Punto, van der Velde, Arjan, Abeln, Sanne, Heringa, Jaap
Publicado 2015

CLUB-MARTINI: Selecting Favourable Interactions amongst Available Candidates, a Coarse-Grained Simulation Approach to Scoring Docking Decoys

por Hou, Qingzhen, Lensink, Marc F., Heringa, Jaap, Feenstra, K. Anton
Publicado 2016

Structure and function analysis of flexible alignment regions in proteins

por Pirovano, Walter, Reijden, Anneke van der, Feenstra, K Anton, Heringa, Jaap
Publicado 2009

NatalieQ: A web server for protein-protein interaction network querying

por El-Kebir, Mohammed, Brandt, Bernd W, Heringa, Jaap, Klau, Gunnar W
Publicado 2014

Towards a knowledge graph for pre-/probiotics and microbiota–gut–brain axis diseases

por Liu, Ting, Lan, Gongjin, Feenstra, K. Anton, Huang, Zhisheng, Heringa, Jaap
Publicado 2022

CGHnormaliter: an iterative strategy to enhance normalization of array CGH data with imbalanced aberrations

por van Houte, Bart PP, Binsl, Thomas W, Hettling, Hannes, Pirovano, Walter, Heringa, Jaap
Publicado 2009

Sequence specificity between interacting and non-interacting homologs identifies interface residues – a homodimer and monomer use case

por Hou, Qingzhen, Dutilh, Bas E., Huynen, Martijn A., Heringa, Jaap, Feenstra, K. Anton
Publicado 2015

BioASF: a framework for automatically generating executable pathway models specified in BioPAX

por Haydarlou, Reza, Jacobsen, Annika, Bonzanni, Nicola, Feenstra, K. Anton, Abeln, Sanne, Heringa, Jaap
Publicado 2016

Motif-Aware PRALINE: Improving the alignment of motif regions

por Dijkstra, Maurits, Bawono, Punto, Abeln, Sanne, Feenstra, K. Anton, Fokkink, Wan, Heringa, Jaap
Publicado 2018

Predicting the relationships between gut microbiota and mental disorders with knowledge graphs

por Liu, Ting, Pan, Xueli, Wang, Xu, Feenstra, K. Anton, Heringa, Jaap, Huang, Zhisheng
Publicado 2020

Identifying foldable regions in protein sequence from the hydrophobic signal

por Pang, Chi N.I., Lin, Kuang, Wouters, Merridee A., Heringa, Jaap, George, Richard A.
Publicado 2008

NGS-eval: NGS Error analysis and novel sequence VAriant detection tooL

por May, Ali, Abeln, Sanne, Buijs, Mark J., Heringa, Jaap, Crielaard, Wim, Brandt, Bernd W.
Publicado 2015