Benchmark of long non-coding RNA quantification for RNA sequencing of cancer samples

por Zheng, Hong, Brennan, Kevin, Hernaez, Mikel, Gevaert, Olivier
Publicado 2019

Denoising of Aligned Genomic Data

por Fischer-Hwang, Irena, Ochoa, Idoia, Weissman, Tsachy, Hernaez, Mikel
Publicado 2019

Cellular plasticity balances the metabolic and proliferation dynamics of a regenerating liver

por Chembazhi, Ullas V., Bangru, Sushant, Hernaez, Mikel, Kalsotra, Auinash
Publicado 2021

JIND: joint integration and discrimination for automated single-cell annotation

por Goyal, Mohit, Serrano, Guillermo, Argemi, Josepmaria, Shomorony, Ilan, Hernaez, Mikel, Ochoa, Idoia
Publicado 2022

Identifying key multifunctional components shared by critical cancer and normal liver pathways via SparseGMM

por Bakr, Shaimaa, Brennan, Kevin, Mukherjee, Pritam, Argemi, Josepmaria, Hernaez, Mikel, Gevaert, Olivier
Publicado 2023

GABAC: an arithmetic coding solution for genomic data

por Voges, Jan, Paridaens, Tom, Müntefering, Fabian, Mainzer, Liudmila S, Bliss, Brian, Yang, Mingyu, Ochoa, Idoia, Fostier, Jan, Ostermann, Jörn, Hernaez, Mikel
Publicado 2020

Bayesian Machine Learning Enables Identification of Transcriptional Network Disruptions Associated with Drug-Resistant Prostate Cancer

por Blatti, Charles, de la Fuente, Jesús, Gao, Huanyao, Marín-Goñi, Irene, Chen, Zikun, Zhao, Sihai D., Tan, Winston, Weinshilboum, Richard, Kalari, Krishna R., Wang, Liewei, Hernaez, Mikel
Publicado 2023

SimiC enables the inference of complex gene regulatory dynamics across cell phenotypes

por Peng, Jianhao, Serrano, Guillermo, Traniello, Ian M., Calleja-Cervantes, Maria E., Chembazhi, Ullas V., Bangru, Sushant, Ezponda, Teresa, Rodriguez-Madoz, Juan Roberto, Kalsotra, Auinash, Prosper, Felipe, Ochoa, Idoia, Hernaez, Mikel
Publicado 2022

Microglia and astrocyte activation is region‐dependent in the α‐synuclein mouse model of Parkinson's disease

por Basurco, Leyre, Abellanas, Miguel Angel, Ayerra, Leyre, Conde, Enrique, Vinueza‐Gavilanes, Rodrigo, Luquin, Esther, Vales, Africa, Vilas, Amaya, Martin‐Uriz, Patxi San, Tamayo, Ibon, Alonso, Marta M., Hernaez, Mikel, Gonzalez‐Aseguinolaza, Gloria, Clavero, Pedro, Mengual, Elisa, Arrasate, Montserrat, Hervás‐Stubbs, Sandra, Aymerich, Maria S.
Publicado 2022

Sentieon DNASeq Variant Calling Workflow Demonstrates Strong Computational Performance and Accuracy

por Kendig, Katherine I., Baheti, Saurabh, Bockol, Matthew A., Drucker, Travis M., Hart, Steven N., Heldenbrand, Jacob R., Hernaez, Mikel, Hudson, Matthew E., Kalmbach, Michael T., Klee, Eric W., Mattson, Nathan R., Ross, Christian A., Taschuk, Morgan, Wieben, Eric D., Wiepert, Mathieu, Wildman, Derek E., Mainzer, Liudmila S.
Publicado 2019

Imaging-AMARETTO: An Imaging Genomics Software Tool to Interrogate Multiomics Networks for Relevance to Radiography and Histopathology Imaging Biomarkers of Clinical Outcomes

por Gevaert, Olivier, Nabian, Mohsen, Bakr, Shaimaa, Everaert, Celine, Shinde, Jayendra, Manukyan, Artur, Liefeld, Ted, Tabor, Thorin, Xu, Jishu, Lupberger, Joachim, Haas, Brian J., Baumert, Thomas F., Hernaez, Mikel, Reich, Michael, Quintana, Francisco J., Uhlmann, Erik J., Krichevsky, Anna M., Mesirov, Jill P., Carey, Vincent, Pochet, Nathalie
Publicado 2020

Optimization of universal allogeneic CAR-T cells combining CRISPR and transposon-based technologies for treatment of acute myeloid leukemia

por Calviño, Cristina, Ceballos, Candela, Alfonso, Ana, Jauregui, Patricia, Calleja-Cervantes, Maria E., San Martin-Uriz, Patxi, Rodriguez-Marquez, Paula, Martin-Mallo, Angel, Iglesias, Elena, Abizanda, Gloria, Rodriguez-Diaz, Saray, Martinez-Turrillas, Rebeca, Illarramendi, Jorge, Viguria, Maria C., Redondo, Margarita, Rifon, Jose, Villar, Sara, Lasarte, Juan J., Inoges, Susana, Lopez-Diaz de Cerio, Ascension, Hernaez, Mikel, Prosper, Felipe, Rodriguez-Madoz, Juan R.
Publicado 2023

Uncovering perturbations in human hematopoiesis associated with healthy aging and myeloid malignancies at single-cell resolution

por Ainciburu, Marina, Ezponda, Teresa, Berastegui, Nerea, Alfonso-Pierola, Ana, Vilas-Zornoza, Amaia, San Martin-Uriz, Patxi, Alignani, Diego, Lamo-Espinosa, Jose, San-Julian, Mikel, Jiménez-Solas, Tamara, Lopez, Felix, Muntion, Sandra, Sanchez-Guijo, Fermin, Molero, Antonieta, Montoro, Julia, Serrano, Guillermo, Diaz-Mazkiaran, Aintzane, Lasaga, Miren, Gomez-Cabrero, David, Diez-Campelo, Maria, Valcarcel, David, Hernaez, Mikel, Romero, Juan P, Prosper, Felipe
Publicado 2023

CAR density influences antitumoral efficacy of BCMA CAR T cells and correlates with clinical outcome

por Rodriguez-Marquez, Paula, Calleja-Cervantes, Maria E., Serrano, Guillermo, Oliver-Caldes, Aina, Palacios-Berraquero, Maria L., Martin-Mallo, Angel, Calviño, Cristina, Español-Rego, Marta, Ceballos, Candela, Lozano, Teresa, San Martin-Uriz, Patxi, Vilas-Zornoza, Amaia, Rodriguez-Diaz, Saray, Martinez-Turrillas, Rebeca, Jauregui, Patricia, Alignani, Diego, Viguria, Maria C., Redondo, Margarita, Pascal, Mariona, Martin-Antonio, Beatriz, Juan, Manel, Urbano-Ispizua, Alvaro, Rodriguez-Otero, Paula, Alfonso-Pierola, Ana, Paiva, Bruno, Lasarte, Juan J., Inoges, Susana, Lopez-Diaz de Cerio, Ascension, San-Miguel, Jesus, Fernandez de Larrea, Carlos, Hernaez, Mikel, Rodriguez-Madoz, Juan R., Prosper, Felipe
Publicado 2022

The transcription factor DDIT3 is a potential driver of dyserythropoiesis in myelodysplastic syndromes

por Berastegui, Nerea, Ainciburu, Marina, Romero, Juan P., Garcia-Olloqui, Paula, Alfonso-Pierola, Ana, Philippe, Céline, Vilas-Zornoza, Amaia, San Martin-Uriz, Patxi, Ruiz-Hernández, Raquel, Abarrategi, Ander, Ordoñez, Raquel, Alignani, Diego, Sarvide, Sarai, Castro-Labrador, Laura, Lamo-Espinosa, José M., San-Julian, Mikel, Jimenez, Tamara, López-Cadenas, Félix, Muntion, Sandra, Sanchez-Guijo, Fermin, Molero, Antonieta, Montoro, Maria Julia, Tazón, Bárbara, Serrano, Guillermo, Diaz-Mazkiaran, Aintzane, Hernaez, Mikel, Huerga, Sofía, Bewicke-Copley, Findlay, Rio-Machin, Ana, Maurano, Matthew T., Díez-Campelo, María, Valcarcel, David, Rouault-Pierre, Kevin, Lara-Astiaso, David, Ezponda, Teresa, Prosper, Felipe
Publicado 2022