Co-evolution of strain design methods based on flux balance and elementary mode analysis

por Machado, Daniel, Herrgård, Markus J.
Publicado 2015

Untangling the web of functional and physical interactions in yeast

por Herrgård, Markus J, Palsson, Bernhard Ø
Publicado 2005

Modeling the Contribution of Allosteric Regulation for Flux Control in the Central Carbon Metabolism of E. coli

por Machado, Daniel, Herrgård, Markus J., Rocha, Isabel
Publicado 2015

Stoichiometric Representation of Gene–Protein–Reaction Associations Leverages Constraint-Based Analysis from Reaction to Gene-Level Phenotype Prediction

por Machado, Daniel, Herrgård, Markus J., Rocha, Isabel
Publicado 2016

Identification of Genome-Scale Metabolic Network Models Using Experimentally Measured Flux Profiles

por Herrgård, Markus J, Fong, Stephen S, Palsson, Bernhard Ø
Publicado 2006

Decomposing complex reaction networks using random sampling, principal component analysis and basis rotation

por Barrett, Christian L, Herrgard, Markus J, Palsson, Bernhard
Publicado 2009

Connecting extracellular metabolomic measurements to intracellular flux states in yeast

por Mo, Monica L, Palsson, Bernhard Ø, Herrgård, Markus J
Publicado 2009

Editorial: Current Challenges in Modeling Cellular Metabolism

por Machado, Daniel, Zhuang, Kai H., Sonnenschein, Nikolaus, Herrgård, Markus J.
Publicado 2015

Leveraging high-resolution omics data for predicting responses and adverse events to immune checkpoint inhibitors

por Limeta, Angelo, Gatto, Francesco, Herrgård, Markus J., Ji, Boyang, Nielsen, Jens
Publicado 2023

Seven gene deletions in seven days: Fast generation of Escherichia coli strains tolerant to acetate and osmotic stress

por Jensen, Sheila I., Lennen, Rebecca M., Herrgård, Markus J., Nielsen, Alex T.
Publicado 2015

Analysis of Genetic Variation and Potential Applications in Genome-Scale Metabolic Modeling

por Cardoso, João G. R., Andersen, Mikael Rørdam, Herrgård, Markus J., Sonnenschein, Nikolaus
Publicado 2015

Selecting the Best: Evolutionary Engineering of Chemical Production in Microbes

por Shepelin, Denis, Hansen, Anne Sofie Lærke, Lennen, Rebecca, Luo, Hao, Herrgård, Markus J.
Publicado 2018

OptCouple: Joint simulation of gene knockouts, insertions and medium modifications for prediction of growth-coupled strain designs

por Jensen, Kristian, Broeken, Valentijn, Hansen, Anne Sofie Lærke, Sonnenschein, Nikolaus, Herrgård, Markus J.
Publicado 2019

CRISPR interference of nucleotide biosynthesis improves production of a single‐domain antibody in Escherichia coli

por Landberg, Jenny, Wright, Naia Risager, Wulff, Tune, Herrgård, Markus J., Nielsen, Alex Toftgaard
Publicado 2020

The YNP Metagenome Project: Environmental Parameters Responsible for Microbial Distribution in the Yellowstone Geothermal Ecosystem

por Inskeep, William P., Jay, Zackary J., Tringe, Susannah G., Herrgård, Markus J., Rusch, Douglas B.
Publicado 2013

Elucidating aromatic acid tolerance at low pH in Saccharomyces cerevisiae using adaptive laboratory evolution

por Pereira, Rui, Mohamed, Elsayed T., Radi, Mohammad S., Herrgård, Markus J., Feist, Adam M., Nielsen, Jens, Chen, Yun
Publicado 2020

MARSI: metabolite analogues for rational strain improvement

por Cardoso, João G R, Zeidan, Ahmad A, Jensen, Kristian, Sonnenschein, Nikolaus, Neves, Ana Rute, Herrgård, Markus J
Publicado 2018

A Genome-Scale Metabolic Model for Methylococcus capsulatus (Bath) Suggests Reduced Efficiency Electron Transfer to the Particulate Methane Monooxygenase

por Lieven, Christian, Petersen, Leander A. H., Jørgensen, Sten Bay, Gernaey, Krist V., Herrgard, Markus J., Sonnenschein, Nikolaus
Publicado 2018

Integration of enzymatic data in Bacillus subtilis genome-scale metabolic model improves phenotype predictions and enables in silico design of poly-γ-glutamic acid production strai...

por Massaiu, Ilaria, Pasotti, Lorenzo, Sonnenschein, Nikolaus, Rama, Erlinda, Cavaletti, Matteo, Magni, Paolo, Calvio, Cinzia, Herrgård, Markus J.
Publicado 2019

Generation of a platform strain for ionic liquid tolerance using adaptive laboratory evolution

por Mohamed, Elsayed T., Wang, Shizeng, Lennen, Rebecca M., Herrgård, Markus J., Simmons, Blake A., Singer, Steven W., Feist, Adam M.
Publicado 2017