A comparison of three programming languages for a full-fledged next-generation sequencing tool

por Costanza, Pascal, Herzeel, Charlotte, Verachtert, Wilfried
Publicado 2019

Comparing Ease of Programming in C++, Go, and Java for Implementing a Next-Generation Sequencing Tool

por Costanza, Pascal, Herzeel, Charlotte, Verachtert, Wilfried
Publicado 2019

elPrep: High-Performance Preparation of Sequence Alignment/Map Files for Variant Calling

por Herzeel, Charlotte, Costanza, Pascal, Decap, Dries, Fostier, Jan, Reumers, Joke
Publicado 2015

Halvade: scalable sequence analysis with MapReduce

por Decap, Dries, Reumers, Joke, Herzeel, Charlotte, Costanza, Pascal, Fostier, Jan
Publicado 2015

Halvade-RNA: Parallel variant calling from transcriptomic data using MapReduce

por Decap, Dries, Reumers, Joke, Herzeel, Charlotte, Costanza, Pascal, Fostier, Jan
Publicado 2017

elPrep 4: A multithreaded framework for sequence analysis

por Herzeel, Charlotte, Costanza, Pascal, Decap, Dries, Fostier, Jan, Verachtert, Wilfried
Publicado 2019

Multithreaded variant calling in elPrep 5

por Herzeel, Charlotte, Costanza, Pascal, Decap, Dries, Fostier, Jan, Wuyts, Roel, Verachtert, Wilfried
Publicado 2021

A software package for efficient patient trajectory analysis applied to analyzing bladder cancer development

por Herzeel, Charlotte, D’Hondt, Ellie, Vandeweerd, Valerie, Botermans, Wouter, Akand, Murat, Van der Aa, Frank, Wuyts, Roel, Verachtert, Wilfried
Publicado 2023

Halvade somatic: Somatic variant calling with Apache Spark

por Decap, Dries, de Schaetzen van Brienen, Louise, Larmuseau, Maarten, Costanza, Pascal, Herzeel, Charlotte, Wuyts, Roel, Marchal, Kathleen, Fostier, Jan
Publicado 2022