SPR Distance Computation for Unrooted Trees

著者: Hickey, Glenn, Dehne, Frank, Rau-Chaplin, Andrew, Blouin, Christian
出版事項 2008

A unifying model of genome evolution under parsimony

著者: Paten, Benedict, Zerbino, Daniel R, Hickey, Glenn, Haussler, David
出版事項 2014

HAL: a hierarchical format for storing and analyzing multiple genome alignments

著者: Hickey, Glenn, Paten, Benedict, Earl, Dent, Zerbino, Daniel, Haussler, David
出版事項 2013

Representing and decomposing genomic structural variants as balanced integer flows on sequence graphs

著者: Zerbino, Daniel R., Ballinger, Tracy, Paten, Benedict, Hickey, Glenn, Haussler, David
出版事項 2016

Sequence tube maps: making graph genomes intuitive to commuters

著者: Beyer, Wolfgang, Novak, Adam M, Hickey, Glenn, Chan, Jeffrey, Tan, Vanessa, Paten, Benedict, Zerbino, Daniel R
出版事項 2019

Genotyping structural variants in pangenome graphs using the vg toolkit

著者: Hickey, Glenn, Heller, David, Monlong, Jean, Sibbesen, Jonas A., Sirén, Jouni, Eizenga, Jordan, Dawson, Eric T., Garrison, Erik, Novak, Adam M., Paten, Benedict
出版事項 2020

Variation graph toolkit improves read mapping by representing genetic variation in the reference

著者: Garrison, Erik, Sirén, Jouni, Novak, Adam M., Hickey, Glenn, Eizenga, Jordan M., Dawson, Eric T., Jones, William, Garg, Shilpa, Markello, Charles, Lin, Michael F., Paten, Benedict, Durbin, Richard
出版事項 2018

Gaps and complex structurally variant loci in phased genome assemblies

著者: Porubsky, David, Vollger, Mitchell R., Harvey, William T., Rozanski, Allison N., Ebert, Peter, Hickey, Glenn, Hasenfeld, Patrick, Sanders, Ashley D., Stober, Catherine, Korbel, Jan O., Paten, Benedict, Marschall, Tobias, Eichler, Evan E.
出版事項 2023

A call for benchmarking transposable element annotation methods

著者: Hoen, Douglas R., Hickey, Glenn, Bourque, Guillaume, Casacuberta, Josep, Cordaux, Richard, Feschotte, Cédric, Fiston-Lavier, Anna-Sophie, Hua-Van, Aurélie, Hubley, Robert, Kapusta, Aurélie, Lerat, Emmanuelle, Maumus, Florian, Pollock, David D., Quesneville, Hadi, Smit, Arian, Wheeler, Travis J., Bureau, Thomas E., Blanchette, Mathieu
出版事項 2015

Progressive Cactus is a multiple-genome aligner for the thousand-genome era

著者: Armstrong, Joel, Hickey, Glenn, Diekhans, Mark, Fiddes, Ian T., Novak, Adam M., Deran, Alden, Fang, Qi, Xie, Duo, Feng, Shaohong, Stiller, Josefin, Genereux, Diane, Johnson, Jeremy, Marinescu, Voichita Dana, Alföldi, Jessica, Harris, Robert S., Lindblad-Toh, Kerstin, Haussler, David, Karlsson, Elinor, Jarvis, Erich D., Zhang, Guojie, Paten, Benedict
出版事項 2020

Alignathon: a competitive assessment of whole-genome alignment methods

著者: Earl, Dent, Nguyen, Ngan, Hickey, Glenn, Harris, Robert S., Fitzgerald, Stephen, Beal, Kathryn, Seledtsov, Igor, Molodtsov, Vladimir, Raney, Brian J., Clawson, Hiram, Kim, Jaebum, Kemena, Carsten, Chang, Jia-Ming, Erb, Ionas, Poliakov, Alexander, Hou, Minmei, Herrero, Javier, Kent, William James, Solovyev, Victor, Darling, Aaron E., Ma, Jian, Notredame, Cedric, Brudno, Michael, Dubchak, Inna, Haussler, David, Paten, Benedict
出版事項 2014

Improved genome assembly of American alligator genome reveals conserved architecture of estrogen signaling

著者: Rice, Edward S., Kohno, Satomi, John, John St., Pham, Son, Howard, Jonathan, Lareau, Liana F., O'Connell, Brendan L., Hickey, Glenn, Armstrong, Joel, Deran, Alden, Fiddes, Ian, Platt, Roy N., Gresham, Cathy, McCarthy, Fiona, Kern, Colin, Haan, David, Phan, Tan, Schmidt, Carl, Sanford, Jeremy R., Ray, David A., Paten, Benedict, Guillette, Louis J., Green, Richard E.
出版事項 2017

The UCSC Genome Browser database: 2015 update

著者: Rosenbloom, Kate R., Armstrong, Joel, Barber, Galt P., Casper, Jonathan, Clawson, Hiram, Diekhans, Mark, Dreszer, Timothy R., Fujita, Pauline A., Guruvadoo, Luvina, Haeussler, Maximilian, Harte, Rachel A., Heitner, Steve, Hickey, Glenn, Hinrichs, Angie S., Hubley, Robert, Karolchik, Donna, Learned, Katrina, Lee, Brian T., Li, Chin H., Miga, Karen H., Nguyen, Ngan, Paten, Benedict, Raney, Brian J., Smit, Arian F. A., Speir, Matthew L., Zweig, Ann S., Haussler, David, Kuhn, Robert M., Kent, W. James
出版事項 2014

A strategy for building and using a human reference pangenome

著者: Llamas, Bastien, Narzisi, Giuseppe, Schneider, Valerie, Audano, Peter A., Biederstedt, Evan, Blauvelt, Lon, Bradbury, Peter, Chang, Xian, Chin, Chen-Shan, Fungtammasan, Arkarachai, Clarke, Wayne E., Cleary, Alan, Ebler, Jana, Eizenga, Jordan, Sibbesen, Jonas A., Markello, Charles J., Garrison, Erik, Garg, Shilpa, Hickey, Glenn, Lazo, Gerard R., Lin, Michael F., Mahmoud, Medhat, Marschall, Tobias, Minkin, Ilia, Monlong, Jean, Musunuri, Rajeeva L., Sagayaradj, Sagayamary, Novak, Adam M., Rautiainen, Mikko, Regier, Allison, Sedlazeck, Fritz J., Siren, Jouni, Souilmi, Yassine, Wagner, Justin, Wrightsman, Travis, Yokoyama, Toshiyuki T., Zeng, Qiandong, Zook, Justin M., Paten, Benedict, Busby, Ben
出版事項 2021

A draft human pangenome reference

著者: Liao, Wen-Wei, Asri, Mobin, Ebler, Jana, Doerr, Daniel, Haukness, Marina, Hickey, Glenn, Lu, Shuangjia, Lucas, Julian K., Monlong, Jean, Abel, Haley J., Buonaiuto, Silvia, Chang, Xian H., Cheng, Haoyu, Chu, Justin, Colonna, Vincenza, Eizenga, Jordan M., Feng, Xiaowen, Fischer, Christian, Fulton, Robert S., Garg, Shilpa, Groza, Cristian, Guarracino, Andrea, Harvey, William T., Heumos, Simon, Howe, Kerstin, Jain, Miten, Lu, Tsung-Yu, Markello, Charles, Martin, Fergal J., Mitchell, Matthew W., Munson, Katherine M., Mwaniki, Moses Njagi, Novak, Adam M., Olsen, Hugh E., Pesout, Trevor, Porubsky, David, Prins, Pjotr, Sibbesen, Jonas A., Sirén, Jouni, Tomlinson, Chad, Villani, Flavia, Vollger, Mitchell R., Antonacci-Fulton, Lucinda L., Baid, Gunjan, Baker, Carl A., Belyaeva, Anastasiya, Billis, Konstantinos, Carroll, Andrew, Chang, Pi-Chuan, Cody, Sarah, Cook, Daniel E., Cook-Deegan, Robert M., Cornejo, Omar E., Diekhans, Mark, Ebert, Peter, Fairley, Susan, Fedrigo, Olivier, Felsenfeld, Adam L., Formenti, Giulio, Frankish, Adam, Gao, Yan, Garrison, Nanibaa’ A., Giron, Carlos Garcia, Green, Richard E., Haggerty, Leanne, Hoekzema, Kendra, Hourlier, Thibaut, Ji, Hanlee P., Kenny, Eimear E., Koenig, Barbara A., Kolesnikov, Alexey, Korbel, Jan O., Kordosky, Jennifer, Koren, Sergey, Lee, HoJoon, Lewis, Alexandra P., Magalhães, Hugo, Marco-Sola, Santiago, Marijon, Pierre, McCartney, Ann, McDaniel, Jennifer, Mountcastle, Jacquelyn, Nattestad, Maria, Nurk, Sergey, Olson, Nathan D., Popejoy, Alice B., Puiu, Daniela, Rautiainen, Mikko, Regier, Allison A., Rhie, Arang, Sacco, Samuel, Sanders, Ashley D., Schneider, Valerie A., Schultz, Baergen I., Shafin, Kishwar, Smith, Michael W., Sofia, Heidi J., Abou Tayoun, Ahmad N., Thibaud-Nissen, Françoise, Tricomi, Francesca Floriana, Wagner, Justin, Walenz, Brian, Wood, Jonathan M. D., Zimin, Aleksey V., Bourque, Guillaume, Chaisson, Mark J. P., Flicek, Paul, Phillippy, Adam M., Zook, Justin M., Eichler, Evan E., Haussler, David, Wang, Ting, Jarvis, Erich D., Miga, Karen H., Garrison, Erik, Marschall, Tobias, Hall, Ira M., Li, Heng, Paten, Benedict
出版事項 2023