Simulated Data for Genomic Selection and Genome-Wide Association Studies Using a Combination of Coalescent and Gene Drop Methods

por Hickey, John M., Gorjanc, Gregor
Publicado 2012

Extending long-range phasing and haplotype library imputation methods to impute genotypes on sex chromosomes

por Hickey, John M, Kranis, Andreas
Publicado 2013

AlphaMate: a program for optimizing selection, maintenance of diversity and mate allocation in breeding programs

por Gorjanc, Gregor, Hickey, John M
Publicado 2018

Reliability of pedigree-based and genomic evaluations in selected populations

por Gorjanc, Gregor, Bijma, Piter, Hickey, John M.
Publicado 2015

Parentage assignment with genotyping‐by‐sequencing data

por Whalen, Andrew, Gorjanc, Gregor, Hickey, John M.
Publicado 2018

Family-specific genotype arrays increase the accuracy of pedigree-based imputation at very low marker densities

por Whalen, Andrew, Gorjanc, Gregor, Hickey, John M.
Publicado 2019

AlphaFamImpute: high-accuracy imputation in full-sib families from genotype-by-sequencing data

por Whalen, Andrew, Gorjanc, Gregor, Hickey, John M
Publicado 2020

A Common Dataset for Genomic Analysis of Livestock Populations

por Cleveland, Matthew A., Hickey, John M., Forni, Selma
Publicado 2012

Optimal cross selection for long-term genetic gain in two-part programs with rapid recurrent genomic selection

por Gorjanc, Gregor, Gaynor, R. Chris, Hickey, John M.
Publicado 2018

AlphaSimR: an R package for breeding program simulations

por Gaynor, R Chris, Gorjanc, Gregor, Hickey, John M
Publicado 2020

Genotype imputation for the prediction of genomic breeding values in non-genotyped and low-density genotyped individuals

por Cleveland, Matthew A, Hickey, John M, Kinghorn, Brian P
Publicado 2011

AlphaPart—R implementation of the method for partitioning genetic trends

por Obšteter, Jana, Holl, Justin, Hickey, John M., Gorjanc, Gregor
Publicado 2021

Assessment of alternative genotyping strategies to maximize imputation accuracy at minimal cost

por Huang, Yijian, Hickey, John M, Cleveland, Matthew A, Maltecca, Christian
Publicado 2012

Initiating maize pre-breeding programs using genomic selection to harness polygenic variation from landrace populations

por Gorjanc, Gregor, Jenko, Janez, Hearne, Sarah J., Hickey, John M.
Publicado 2016

A method for allocating low-coverage sequencing resources by targeting haplotypes rather than individuals

por Ros-Freixedes, Roger, Gonen, Serap, Gorjanc, Gregor, Hickey, John M.
Publicado 2017

Assessment of the performance of hidden Markov models for imputation in animal breeding

por Whalen, Andrew, Gorjanc, Gregor, Ros-Freixedes, Roger, Hickey, John M.
Publicado 2018

Flexible modelling of spatial variation in agricultural field trials with the R package INLA

por Selle, Maria Lie, Steinsland, Ingelin, Hickey, John M., Gorjanc, Gregor
Publicado 2019

Different models of genetic variation and their effect on genomic evaluation

por Clark, Samuel A, Hickey, John M, van der Werf, Julius HJ
Publicado 2011

Potential of genotyping-by-sequencing for genomic selection in livestock populations

por Gorjanc, Gregor, Cleveland, Matthew A, Houston, Ross D, Hickey, John M
Publicado 2015

A hybrid method for the imputation of genomic data in livestock populations

por Antolín, Roberto, Nettelblad, Carl, Gorjanc, Gregor, Money, Daniel, Hickey, John M.
Publicado 2017