Models of cell signaling uncover molecular mechanisms of high-risk neuroblastoma and predict disease outcome

por Hidalgo, Marta R., Amadoz, Alicia, Çubuk, Cankut, Carbonell-Caballero, José, Dopazo, Joaquín
Publicado 2018

A comparison of mechanistic signaling pathway activity analysis methods

por Amadoz, Alicia, Hidalgo, Marta R, Çubuk, Cankut, Carbonell-Caballero, José, Dopazo, Joaquín
Publicado 2018

Common pathways and functional profiles reveal underlying patterns in Breast, Kidney and Lung cancers

por Romera-Giner, Sergio, Andreu Martínez, Zoraida, García-García, Francisco, Hidalgo, Marta R.
Publicado 2021

Mechanistic models of signaling pathways deconvolute the glioblastoma single-cell functional landscape

por Falco, Matías M, Peña-Chilet, María, Loucera, Carlos, Hidalgo, Marta R, Dopazo, Joaquín
Publicado 2020

High throughput estimation of functional cell activities reveals disease mechanisms and predicts relevant clinical outcomes

por Hidalgo, Marta R., Cubuk, Cankut, Amadoz, Alicia, Salavert, Francisco, Carbonell-Caballero, José, Dopazo, Joaquin
Publicado 2016

Unveiling Sex-Based Differences in the Effects of Alcohol Abuse: A Comprehensive Functional Meta-Analysis of Transcriptomic Studies

por Casanova Ferrer, Franc, Pascual, María, Hidalgo, Marta R., Malmierca-Merlo, Pablo, Guerri, Consuelo, García-García, Francisco
Publicado 2020

Using mechanistic models for the clinical interpretation of complex genomic variation

por Peña-Chilet, María, Esteban-Medina, Marina, Falco, Matias M., Rian, Kinza, Hidalgo, Marta R., Loucera, Carlos, Dopazo, Joaquín
Publicado 2019

Reference genome assessment from a population scale perspective: an accurate profile of variability and noise

por Carbonell-Caballero, José, Amadoz, Alicia, Alonso, Roberto, Hidalgo, Marta R, Çubuk, Cankut, Conesa, David, López-Quílez, Antonio, Dopazo, Joaquín
Publicado 2017

Differential metabolic activity and discovery of therapeutic targets using summarized metabolic pathway models

por Çubuk, Cankut, Hidalgo, Marta R., Amadoz, Alicia, Rian, Kinza, Salavert, Francisco, Pujana, Miguel A., Mateo, Francesca, Herranz, Carmen, Carbonell-Caballero, Jose, Dopazo, Joaquín
Publicado 2019

Genome-scale mechanistic modeling of signaling pathways made easy: A bioconductor/cytoscape/web server framework for the analysis of omic data

por Rian, Kinza, Hidalgo, Marta R., Çubuk, Cankut, Falco, Matias M., Loucera, Carlos, Esteban-Medina, Marina, Alamo-Alvarez, Inmaculada, Peña-Chilet, María, Dopazo, Joaquín
Publicado 2021

NPC transplantation rescues sci-driven cAMP/EPAC2 alterations, leading to neuroprotection and microglial modulation

por Martínez-Rojas, Beatriz, Giraldo, Esther, Grillo-Risco, Rubén, Hidalgo, Marta R., López-Mocholi, Eric, Alastrue-Agudo, Ana, García-García, Francisco, Moreno-Manzano, Victoria
Publicado 2022

Mechanistic modeling of the SARS-CoV-2 disease map

por Rian, Kinza, Esteban-Medina, Marina, Hidalgo, Marta R., Çubuk, Cankut, Falco, Matias M., Loucera, Carlos, Gunyel, Devrim, Ostaszewski, Marek, Peña-Chilet, María, Dopazo, Joaquín
Publicado 2021

Hepatic steatosis and steatohepatitis: a functional meta-analysis of sex-based differences in transcriptomic studies

por Català-Senent, José F., Hidalgo, Marta R., Berenguer, Marina, Parthasarathy, Gopanandan, Malhi, Harmeet, Malmierca-Merlo, Pablo, de la Iglesia-Vayá, María, García-García, Francisco
Publicado 2021

Deciphering the sex bias in housekeeping gene expression in adipose tissue: a comprehensive meta-analysis of transcriptomic studies

por Guaita-Cespedes, Maria, Grillo-Risco, Rubén, Hidalgo, Marta R., Fernández-Veledo, Sonia, Burks, Deborah Jane, de la Iglesia-Vayá, María, Galán, Amparo, Garcia-Garcia, Francisco
Publicado 2023

A Comprehensive Transcriptional Signature in Pancreatic Ductal Adenocarcinoma Reveals New Insights into the Immune and Desmoplastic Microenvironments

por Pérez-Díez, Irene, Andreu, Zoraida, Hidalgo, Marta R., Perpiñá-Clérigues, Carla, Fantín, Lucía, Fernandez-Serra, Antonio, de la Iglesia-Vaya, María, Lopez-Guerrero, José A., García-García, Francisco
Publicado 2023

Functional Signatures in Non-Small-Cell Lung Cancer: A Systematic Review and Meta-Analysis of Sex-Based Differences in Transcriptomic Studies

por Pérez-Díez, Irene, Hidalgo, Marta R., Malmierca-Merlo, Pablo, Andreu, Zoraida, Romera-Giner, Sergio, Farràs, Rosa, de la Iglesia-Vayá, María, Provencio, Mariano, Romero, Atocha, García-García, Francisco
Publicado 2021

Unveiling sex-based differences in Parkinson's disease: a comprehensive meta-analysis of transcriptomic studies

por López-Cerdán, Adolfo, Andreu, Zoraida, Hidalgo, Marta R., Grillo-Risco, Rubén, Català-Senent, José Francisco, Soler-Sáez, Irene, Neva-Alejo, Almudena, Gordillo, Fernando, de la Iglesia-Vayá, María, García-García, Francisco
Publicado 2022

Minimal hepatic encephalopathy is associated to alterations in eye movements

por Casanova-Ferrer, Franc, García-Cena, Cecilia E., Gallego, Juan-Jose, Fiorillo, Alessandra, Urios, Amparo, Calvo-Córdoba, Alberto, Ballester, Maria-Pilar, Ríos, María Pilar, Durbán, Lucía, Hidalgo, Marta R., García, Francisco, Felipo, Vicente, Montoliu, Carmina
Publicado 2022

Babelomics 5.0: functional interpretation for new generations of genomic data

por Alonso, Roberto, Salavert, Francisco, Garcia-Garcia, Francisco, Carbonell-Caballero, Jose, Bleda, Marta, Garcia-Alonso, Luz, Sanchis-Juan, Alba, Perez-Gil, Daniel, Marin-Garcia, Pablo, Sanchez, Ruben, Cubuk, Cankut, Hidalgo, Marta R., Amadoz, Alicia, Hernansaiz-Ballesteros, Rosa D., Alemán, Alejandro, Tarraga, Joaquin, Montaner, David, Medina, Ignacio, Dopazo, Joaquin
Publicado 2015

The effects of death and post-mortem cold ischemia on human tissue transcriptomes

por Ferreira, Pedro G., Muñoz-Aguirre, Manuel, Reverter, Ferran, Sá Godinho, Caio P., Sousa, Abel, Amadoz, Alicia, Sodaei, Reza, Hidalgo, Marta R., Pervouchine, Dmitri, Carbonell-Caballero, Jose, Nurtdinov, Ramil, Breschi, Alessandra, Amador, Raziel, Oliveira, Patrícia, Çubuk, Cankut, Curado, João, Aguet, François, Oliveira, Carla, Dopazo, Joaquin, Sammeth, Michael, Ardlie, Kristin G., Guigó, Roderic
Publicado 2018