Importation of Alpha and Delta variants during the SARS-CoV-2 epidemic in Switzerland: Phylogenetic analysis and intervention scenarios

por Reichmuth, Martina L., Hodcroft, Emma B., Althaus, Christian L.
Publicado 2023

Sharing, synthesis and sustainability of data analysis for epidemic preparedness in Europe

por Kucharski, Adam J, Hodcroft, Emma B, Kraemer, Moritz U G
Publicado 2021

Intra- and interpatient evolution of enterovirus D68 analyzed by whole-genome deep sequencing

por Dyrdak, Robert, Mastafa, Monika, Hodcroft, Emma B, Neher, Richard A, Albert, Jan
Publicado 2019

Interactions between seasonal human coronaviruses and implications for the SARS-CoV-2 pandemic: A retrospective study in Stockholm, Sweden, 2009-2020

por Dyrdak, Robert, Hodcroft, Emma B., Wahlund, Martina, Neher, Richard A., Albert, Jan
Publicado 2021

Public health actions to control new SARS-CoV-2 variants

por Grubaugh, Nathan D., Hodcroft, Emma B., Fauver, Joseph R., Phelan, Alexandra L., Cevik, Muge
Publicado 2021

Using nearly full-genome HIV sequence data improves phylogeny reconstruction in a simulated epidemic

por Yebra, Gonzalo, Hodcroft, Emma B., Ragonnet-Cronin, Manon L., Pillay, Deenan, Brown, Andrew J. Leigh
Publicado 2016

Impact of cross-border-associated cases on the SARS-CoV-2 epidemic in Switzerland during summer 2020 and 2021

por Reichmuth, Martina L., Hodcroft, Emma B., Riou, Julien, Neher, Richard A., Hens, Niel, Althaus, Christian L.
Publicado 2022

Augur: a bioinformatics toolkit for phylogenetic analyses of human pathogens

por Huddleston, John, Hadfield, James, Sibley, Thomas R., Lee, Jover, Fay, Kairsten, Ilcisin, Misja, Harkins, Elias, Bedford, Trevor, Neher, Richard A., Hodcroft, Emma B.
Publicado 2021

Transmission of Non-B HIV Subtypes in the United Kingdom Is Increasingly Driven by Large Non-Heterosexual Transmission Clusters

por Ragonnet-Cronin, Manon, Lycett, Samantha J., Hodcroft, Emma B., Hué, Stéphane, Fearnhill, Esther, Brown, Alison E., Delpech, Valerie, Dunn, David, Leigh Brown, Andrew J.
Publicado 2016

Evolution, geographic spreading, and demographic distribution of Enterovirus D68

por Hodcroft, Emma B., Dyrdak, Robert, Andrés, Cristina, Egli, Adrian, Reist, Josiane, García Martínez de Artola, Diego, Alcoba-Flórez, Julia, Niesters, Hubert G. M., Antón, Andrés, Poelman, Randy, Reynders, Marijke, Wollants, Elke, Neher, Richard A., Albert, Jan
Publicado 2022

A Direct Comparison of Two Densely Sampled HIV Epidemics: The UK and Switzerland

por Ragonnet-Cronin, Manon L., Shilaih, Mohaned, Günthard, Huldrych F., Hodcroft, Emma B., Böni, Jürg, Fearnhill, Esther, Dunn, David, Yerly, Sabine, Klimkait, Thomas, Aubert, Vincent, Yang, Wan-Lin, Brown, Alison E., Lycett, Samantha J., Kouyos, Roger, Brown, Andrew J. Leigh
Publicado 2016

Transmission of SARS-CoV-2 in domestic cats imposes a narrow bottleneck

por Braun, Katarina M., Moreno, Gage K., Halfmann, Peter J., Hodcroft, Emma B., Baker, David A., Boehm, Emma C., Weiler, Andrea M., Haj, Amelia K., Hatta, Masato, Chiba, Shiho, Maemura, Tadashi, Kawaoka, Yoshihiro, Koelle, Katia, O’Connor, David H., Friedrich, Thomas C.
Publicado 2021

Transmission of SARS-CoV-2 in domestic cats imposes a narrow bottleneck

por Braun, Katarina M., Moreno, Gage K., Halfmann, Peter J., Hodcroft, Emma B., Baker, David A., Boehm, Emma C., Weiler, Andrea M., Haj, Amelia K., Hatta, Masato, Chiba, Shiho, Maemura, Tadashi, Kawaoka, Yoshihiro, Koelle, Katia, O’Connor, David H., Friedrich, Thomas C.
Publicado 2021

Co-circulation of multiple enterovirus D68 subclades, including a novel B3 cluster, across Europe in a season of expected low prevalence, 2019/20

por Midgley, Sofie Elisabeth, Benschop, Kimberley, Dyrdak, Robert, Mirand, Audrey, Bailly, Jean-Luc, Bierbaum, Sibylle, Buderus, Stefan, Böttcher, Sindy, Eis-Hübinger, Anna-Maria, Hönemann, Mario, Jensen, Veronika Vorobieva, Hartling, Ulla Birgitte, Henquell, Cécile, Panning, Marcus, Thomsen, Marianne Kragh, Hodcroft, Emma B, Meijer, Adam
Publicado 2020

Functional SARS-CoV-2 cross-reactive CD4(+) T cells established in early childhood decline with age

por Humbert, Marion, Olofsson, Anna, Wullimann, David, Niessl, Julia, Hodcroft, Emma B., Cai, Curtis, Gao, Yu, Sohlberg, Ebba, Dyrdak, Robert, Mikaeloff, Flora, Neogi, Ujjwal, Albert, Jan, Malmberg, Karl-Johan, Lund-Johansen, Fridtjof, Aleman, Soo, Björkhem-Bergman, Linda, Jenmalm, Maria C., Ljunggren, Hans-Gustaf, Buggert, Marcus, Karlsson, Annika C.
Publicado 2023

Emergence and spread of a SARS-CoV-2 variant through Europe in the summer of 2020

por Hodcroft, Emma B., Zuber, Moira, Nadeau, Sarah, Vaughan, Timothy G., Crawford, Katharine H. D., Althaus, Christian L., Reichmuth, Martina L., Bowen, John E., Walls, Alexandra C., Corti, Davide, Bloom, Jesse D., Veesler, David, Mateo, David, Hernando, Alberto, Comas, Iñaki, González Candelas, Fernando, Stadler, Tanja, Neher, Richard A.
Publicado 2021

Emergence in late 2020 of multiple lineages of SARS-CoV-2 Spike protein variants affecting amino acid position 677

por Hodcroft, Emma B., Domman, Daryl B., Snyder, Daniel J., Oguntuyo, Kasopefoluwa Y., Van Diest, Maarten, Densmore, Kenneth H., Schwalm, Kurt C., Femling, Jon, Carroll, Jennifer L., Scott, Rona S., Whyte, Martha M., Edwards, Michael W., Hull, Noah C., Kevil, Christopher G., Vanchiere, John A., Lee, Benhur, Dinwiddie, Darrell L., Cooper, Vaughn S., Kamil, Jeremy P.
Publicado 2021

Pervasive and non-random recombination in near full-length HIV genomes from Uganda

por Grant, Heather E, Hodcroft, Emma B, Ssemwanga, Deogratius, Kitayimbwa, John M, Yebra, Gonzalo, Esquivel Gomez, Luis Roger, Frampton, Dan, Gall, Astrid, Kellam, Paul, de Oliveira, Tulio, Bbosa, Nicholas, Nsubuga, Rebecca N, Kibengo, Freddie, Kwan, Tsz Ho, Lycett, Samantha, Kao, Rowland, Robertson, David L, Ratmann, Oliver, Fraser, Christophe, Pillay, Deenan, Kaleebu, Pontiano, Leigh Brown, Andrew J
Publicado 2020

Phylogenetic Tools for Generalized HIV-1 Epidemics: Findings from the PANGEA-HIV Methods Comparison

por Ratmann, Oliver, Hodcroft, Emma B., Pickles, Michael, Cori, Anne, Hall, Matthew, Lycett, Samantha, Colijn, Caroline, Dearlove, Bethany, Didelot, Xavier, Frost, Simon, Hossain, A.S. Md Mukarram, Joy, Jeffrey B., Kendall, Michelle, Kühnert, Denise, Leventhal, Gabriel E., Liang, Richard, Plazzotta, Giacomo, Poon, Art F.Y., Rasmussen, David A., Stadler, Tanja, Volz, Erik, Weis, Caroline, Leigh Brown, Andrew J., Fraser, Christophe
Publicado 2017

Scientific consensus on the COVID-19 pandemic: we need to act now

por Alwan, Nisreen A, Burgess, Rochelle Ann, Ashworth, Simon, Beale, Rupert, Bhadelia, Nahid, Bogaert, Debby, Dowd, Jennifer, Eckerle, Isabella, Goldman, Lynn R, Greenhalgh, Trisha, Gurdasani, Deepti, Hamdy, Adam, Hanage, William P, Hodcroft, Emma B, Hyde, Zoë, Kellam, Paul, Kelly-Irving, Michelle, Krammer, Florian, Lipsitch, Marc, McNally, Alan, McKee, Martin, Nouri, Ali, Pimenta, Dominic, Priesemann, Viola, Rutter, Harry, Silver, Joshua, Sridhar, Devi, Swanton, Charles, Walensky, Rochelle P, Yamey, Gavin, Ziauddeen, Hisham
Publicado 2020