The effect of sequencing errors on metagenomic gene prediction

por Hoff, Katharina J
Publicado 2009

MakeHub: Fully Automated Generation of UCSC Genome Browser Assembly Hubs

por Hoff, Katharina Jasmin
Publicado 2019

WebAUGUSTUS—a web service for training AUGUSTUS and predicting genes in eukaryotes

por Hoff, Katharina J., Stanke, Mario
Publicado 2013

Orphelia: predicting genes in metagenomic sequencing reads

por Hoff, Katharina J., Lingner, Thomas, Meinicke, Peter, Tech, Maike
Publicado 2009

VARUS: sampling complementary RNA reads from the sequence read archive

por Stanke, Mario, Bruhn, Willy, Becker, Felix, Hoff, Katharina J.
Publicado 2019

BRAKER2: automatic eukaryotic genome annotation with GeneMark-EP+ and AUGUSTUS supported by a protein database

por Brůna, Tomáš, Hoff, Katharina J, Lomsadze, Alexandre, Stanke, Mario, Borodovsky, Mark
Publicado 2021

TSEBRA: transcript selector for BRAKER

por Gabriel, Lars, Hoff, Katharina J., Brůna, Tomáš, Borodovsky, Mark, Stanke, Mario
Publicado 2021

Gene prediction in metagenomic fragments: A large scale machine learning approach

por Hoff, Katharina J, Tech, Maike, Lingner, Thomas, Daniel, Rolf, Morgenstern, Burkhard, Meinicke, Peter
Publicado 2008

BRAKER3: Fully Automated Genome Annotation Using RNA-Seq and Protein Evidence with GeneMark-ETP, AUGUSTUS and TSEBRA

por Gabriel, Lars, Brůna, Tomáš, Hoff, Katharina J., Ebel, Matthis, Lomsadze, Alexandre, Borodovsky, Mark, Stanke, Mario
Publicado 2023

Non-invasive and label-free 3D-visualization shows in vivo oligomerization of the staphylococcal alkaline shock protein 23 (Asp23)

por Petersen, Inga, Schlüter, Rabea, Hoff, Katharina J., Liebscher, Volkmar, Bange, Gert, Riedel, Katharina, Pané-Farré, Jan
Publicado 2020

Full Genome Sequence of a Methanomassiliicoccales Representative Enriched from Peat Soil

por Weil, Micha, Hoff, Katharina J., Meißner, Walter, Schäfer, Fabian, Söllinger, Andrea, Wang, Haitao, Hagenau, Lisa, Kuss, Andreas W., Urich, Tim
Publicado 2021

GALBA: Genome Annotation with Miniprot and AUGUSTUS

por Brůna, Tomáš, Li, Heng, Guhlin, Joseph, Honsel, Daniel, Herbold, Steffen, Stanke, Mario, Nenasheva, Natalia, Ebel, Matthis, Gabriel, Lars, Hoff, Katharina J.
Publicado 2023

Galba: genome annotation with miniprot and AUGUSTUS

por Brůna, Tomáš, Li, Heng, Guhlin, Joseph, Honsel, Daniel, Herbold, Steffen, Stanke, Mario, Nenasheva, Natalia, Ebel, Matthis, Gabriel, Lars, Hoff, Katharina J.
Publicado 2023

Chromosome-level reference genome of the European wasp spider Argiope bruennichi: a resource for studies on range expansion and evolutionary adaptation

por Sheffer, Monica M, Hoppe, Anica, Krehenwinkel, Henrik, Uhl, Gabriele, Kuss, Andreas W, Jensen, Lars, Jensen, Corinna, Gillespie, Rosemary G, Hoff, Katharina J, Prost, Stefan
Publicado 2021

Neutrophil-derived reactive agents induce a transient SpeB negative phenotype in Streptococcus pyogenes

por Shumba, Patience, Sura, Thomas, Moll, Kirsten, Chakrakodi, Bhavya, Tölken, Lea A., Hoßmann, Jörn, Hoff, Katharina J., Hyldegaard, Ole, Nekludov, Michael, Svensson, Mattias, Arnell, Per, Skrede, Steinar, Norrby-Teglund, Anna, Siemens, Nikolai
Publicado 2023

Pseudomonas Strains Induce Transcriptional and Morphological Changes and Reduce Root Colonization of Verticillium spp.

por Harting, Rebekka, Nagel, Alexandra, Nesemann, Kai, Höfer, Annalena M., Bastakis, Emmanouil, Kusch, Harald, Stanley, Claire E., Stöckli, Martina, Kaever, Alexander, Hoff, Katharina J., Stanke, Mario, deMello, Andrew J., Künzler, Markus, Haney, Cara H., Braus-Stromeyer, Susanna A., Braus, Gerhard H.
Publicado 2021

A 20‐kb lineage‐specific genomic region tames virulence in pathogenic amphidiploid Verticillium longisporum

por Harting, Rebekka, Starke, Jessica, Kusch, Harald, Pöggeler, Stefanie, Maurus, Isabel, Schlüter, Rabea, Landesfeind, Manuel, Bulla, Ingo, Nowrousian, Minou, de Jonge, Ronnie, Stahlhut, Gertrud, Hoff, Katharina J., Aßhauer, Kathrin P., Thürmer, Andrea, Stanke, Mario, Daniel, Rolf, Morgenstern, Burkhard, Thomma, Bart P. H. J., Kronstad, James W., Braus‐Stromeyer, Susanna A., Braus, Gerhard H.
Publicado 2021

The genomic basis of evolutionary differentiation among honey bees

por Fouks, Bertrand, Brand, Philipp, Nguyen, Hung N., Herman, Jacob, Camara, Francisco, Ence, Daniel, Hagen, Darren E., Hoff, Katharina J., Nachweide, Stefanie, Romoth, Lars, Walden, Kimberly K.O., Guigo, Roderic, Stanke, Mario, Narzisi, Giuseppe, Yandell, Mark, Robertson, Hugh M., Koeniger, Nikolaus, Chantawannakul, Panuwan, Schatz, Michael C., Worley, Kim C., Robinson, Gene E., Elsik, Christine G., Rueppell, Olav
Publicado 2021

Genomic analysis of the international high-risk clonal lineage Klebsiella pneumoniae sequence type 395

por Shaidullina, Elvira R., Schwabe, Michael, Rohde, Thomas, Shapovalova, Valeria V., Dyachkova, Marina S., Matsvay, Alina D., Savochkina, Yuliya A., Shelenkov, Andrey A., Mikhaylova, Yulia V., Sydow, Katharina, Lebreton, François, Idelevich, Evgeny A., Heiden, Stefan E., Becker, Karsten, Kozlov, Roman S., Shipulin, German A., Akimkin, Vasiliy G., Lalk, Michael, Guenther, Sebastian, Zautner, Andreas E., Bohnert, Jürgen A., Mardanova, Ayslu M., Bouganim, Ruth, Marchaim, Dror, Hoff, Katharina J., Schaufler, Katharina, Edelstein, Mikhail V.
Publicado 2023

Finding the missing honey bee genes: lessons learned from a genome upgrade

por Elsik, Christine G, Worley, Kim C, Bennett, Anna K, Beye, Martin, Camara, Francisco, Childers, Christopher P, de Graaf, Dirk C, Debyser, Griet, Deng, Jixin, Devreese, Bart, Elhaik, Eran, Evans, Jay D, Foster, Leonard J, Graur, Dan, Guigo, Roderic, Hoff, Katharina Jasmin, Holder, Michael E, Hudson, Matthew E, Hunt, Greg J, Jiang, Huaiyang, Joshi, Vandita, Khetani, Radhika S, Kosarev, Peter, Kovar, Christie L, Ma, Jian, Maleszka, Ryszard, Moritz, Robin F A, Munoz-Torres, Monica C, Murphy, Terence D, Muzny, Donna M, Newsham, Irene F, Reese, Justin T, Robertson, Hugh M, Robinson, Gene E, Rueppell, Olav, Solovyev, Victor, Stanke, Mario, Stolle, Eckart, Tsuruda, Jennifer M, Vaerenbergh, Matthias Van, Waterhouse, Robert M, Weaver, Daniel B, Whitfield, Charles W, Wu, Yuanqing, Zdobnov, Evgeny M, Zhang, Lan, Zhu, Dianhui, Gibbs, Richard A
Publicado 2014