Aberrant Gut Microbiome Contributes to Intestinal Oxidative Stress, Barrier Dysfunction, Inflammation and Systemic Autoimmune Responses in MRL/lpr Mice

por Wang, Hui, Wang, Gangduo, Banerjee, Nivedita, Liang, Yuejin, Du, Xiaotang, Boor, Paul J., Hoffman, Kristi L., Khan, M. Firoze
Publicado 2021

Antibiotic Treatments During Infancy, Changes in Nasal Microbiota, and Asthma Development: Population-based Cohort Study

por Toivonen, Laura, Schuez-Havupalo, Linnea, Karppinen, Sinikka, Waris, Matti, Hoffman, Kristi L, Camargo, Carlos A, Hasegawa, Kohei, Peltola, Ville
Publicado 2020

Comparison of Methods To Collect Fecal Samples for Microbiome Studies Using Whole-Genome Shotgun Metagenomic Sequencing

por Byrd, Doratha A., Sinha, Rashmi, Hoffman, Kristi L., Chen, Jun, Hua, Xing, Shi, Jianxin, Chia, Nicholas, Petrosino, Joseph, Vogtmann, Emily
Publicado 2020

The impact of the Th17:Treg axis on the IgA-Biome across the glycemic spectrum

por Essigmann, Heather T., Hoffman, Kristi L., Petrosino, Joseph F., Jun, Goo, Aguilar, David, Hanis, Craig L., DuPont, Herbert L., Brown, Eric L.
Publicado 2021

Maternal gut microbiota mediate intergenerational effects of high-fat diet on descendant social behavior

por Di Gesù, Claudia M., Matz, Lisa M., Bolding, Ian J., Fultz, Robert, Hoffman, Kristi L., Gammazza, Antonella Marino, Petrosino, Joseph F., Buffington, Shelly A.
Publicado 2023

Oral microbiota reveals signs of acculturation in Mexican American women

por Hoffman, Kristi L., Hutchinson, Diane S., Fowler, Jerry, Smith, Daniel P., Ajami, Nadim J., Zhao, Hua, Scheet, Paul, Chow, Wong-Ho, Petrosino, Joseph F., Daniel, Carrie R.
Publicado 2018

IgA-Biome Profiles Correlate with Clinical Parkinson’s Disease Subtypes

por Brown, Eric L., Essigmann, Heather T., Hoffman, Kristi L., Alexander, Ashley S., Newmark, Michael, Jiang, Zhi-Dong, Suescun, Jessika, Schiess, Mya C., Hanis, Craig L., DuPont, Herbert L.
Publicado 2023

The BE GONE trial study protocol: a randomized crossover dietary intervention of dry beans targeting the gut microbiome of overweight and obese patients with a history of colorecta...

por Zhang, Xiaotao, Browman, Gladys, Siu, Wesley, Basen-Engquist, Karen M., Hanash, Samir M., Hoffman, Kristi L., Okhuysen, Pablo C., Scheet, Paul, Petrosino, Joseph F., Kopetz, Scott, Daniel, Carrie R.
Publicado 2019

Habitual Sleep Duration and the Colonic Mucosa-Associated Gut Microbiota in Humans—A Pilot Study

por Agrawal, Ritwick, Ajami, Nadim J., Malhotra, Sonal, Chen, Liang, White, Donna L., Sharafkhaneh, Amir, Hoffman, Kristi L., Graham, David Y., El-Serag, Hashem B., Petrosino, Joseph F., Jiao, Li
Publicado 2021

Houston hurricane Harvey health (Houston-3H) study: assessment of allergic symptoms and stress after hurricane Harvey flooding

por Oluyomi, Abiodun O., Panthagani, Kristen, Sotelo, Jesus, Gu, Xiangjun, Armstrong, Georgina, Luo, Dan Na, Hoffman, Kristi L., Rohlman, Diana, Tidwell, Lane, Hamilton, Winifred J., Symanski, Elaine, Anderson, Kimberly, Petrosino, Joseph F., Walker, Cheryl Lyn, Bondy, Melissa
Publicado 2021

Modeling nonsegmented negative-strand RNA virus (NNSV) transcription with ejective polymerase collisions and biased diffusion

por Piedra, Felipe-Andrés, Henke, David, Rajan, Anubama, Muzny, Donna M., Doddapaneni, Harsha, Menon, Vipin K., Hoffman, Kristi L., Ross, Matthew C., Javornik Cregeen, Sara J., Metcalf, Ginger, Gibbs, Richard A., Petrosino, Joseph F., Avadhanula, Vasanthi, Piedra, Pedro A.
Publicado 2023

Pathogenesis of Tobacco-Associated Lung Adenocarcinoma Is Closely Coupled with Changes in the Gut and Lung Microbiomes

por Finnicum, Casey T., Rahal, Zahraa, Hassane, Maya, Treekitkarnmongkol, Warapen, Sinjab, Ansam, Morris, Rhiannon, Liu, Yuejiang, Tang, Elizabeth L., Viet, Sarah, Petersen, Jason L., Lorenzi, Philip L., Tan, Lin, Petrosino, Joseph, Hoffman, Kristi L., Fujimoto, Junya, Moghaddam, Seyed Javad, Kadara, Humam
Publicado 2022

The Roles of Gut Microbiome and Plasma Metabolites in the Associations between ABO Blood Groups and Insulin Homeostasis: The Microbiome and Insulin Longitudinal Evaluation Study (M...

por Li-Gao, Ruifang, Grubbs, Kirk, Bertoni, Alain G., Hoffman, Kristi L., Petrosino, Joseph F., Ramesh, Gautam, Wu, Martin, Rotter, Jerome I., Chen, Yii-Der Ida, Evans, Anne M., Robinson, Richard J., Sommerville, Laura, Mook-Kanamori, Dennis, Goodarzi, Mark O., Michelotti, Gregory A., Sheridan, Patricia A.
Publicado 2022

Oral insulin immunotherapy in children at risk for type 1 diabetes in a randomised controlled trial

por Assfalg, Robin, Knoop, Jan, Hoffman, Kristi L., Pfirrmann, Markus, Zapardiel-Gonzalo, Jose Maria, Hofelich, Anna, Eugster, Anne, Weigelt, Marc, Matzke, Claudia, Reinhardt, Julia, Fuchs, Yannick, Bunk, Melanie, Weiss, Andreas, Hippich, Markus, Halfter, Kathrin, Hauck, Stefanie M., Hasford, Jörg, Petrosino, Joseph F., Achenbach, Peter, Bonifacio, Ezio, Ziegler, Anette-Gabriele
Publicado 2021

Salivary Biomarker Evaluation of Chronic Pancreatitis Patients Reveals Alterations in Human Proteins, Cytokines, Prostaglandin E(2) Levels, and Bacterial Diversity

por Waldron, Richard T., Jones, Elaina K., Anani, Vincent I., Hines, Jolaine M., Zhao, Jing, Lugea, Aurelia, Diniz, Marcio A., Kim, Sungjin, Habtezion, Aida, Hoffman, Kristi L., Petrosino, Joseph F., Fisher, William E., Li, Liang, Lennon, Ryan J., Singh, Ravinder Jit, Vege, Santhi Swaroop, Pandol, Stephen J., Topazian, Mark D.
Publicado 2022

Oligonucleotide capture sequencing of the SARS-CoV-2 genome and subgenomic fragments from COVID-19 individuals

por Doddapaneni, Harsha, Cregeen, Sara Javornik, Sucgang, Richard, Meng, Qingchang, Qin, Xiang, Avadhanula, Vasanthi, Chao, Hsu, Menon, Vipin, Nicholson, Erin, Henke, David, Piedra, Felipe-Andres, Rajan, Anubama, Momin, Zeineen, Kottapalli, Kavya, Hoffman, Kristi L., Sedlazeck, Fritz J., Metcalf, Ginger, Piedra, Pedro A., Muzny, Donna M., Petrosino, Joseph F., Gibbs, Richard A.
Publicado 2020

Oligonucleotide Capture Sequencing of the SARS-CoV-2 Genome and Subgenomic Fragments from COVID-19 Individuals

por Doddapaneni, Harsha, Cregeen, Sara Javornik, Sucgang, Richard, Meng, Qingchang, Qin, Xiang, Avadhanula, Vasanthi, Chao, Hsu, Menon, Vipin, Nicholson, Erin, Henke, David, Piedra, Felipe-Andres, Rajan, Anubama, Momin, Zeineen, Kottapalli, Kavya, Hoffman, Kristi L., Sedlazeck, Fritz J., Metcalf, Ginger, Piedra, Pedro A., Muzny, Donna M., Petrosino, Joseph F., Gibbs, Richard A.
Publicado 2020

Oligonucleotide capture sequencing of the SARS-CoV-2 genome and subgenomic fragments from COVID-19 individuals

por Doddapaneni, Harsha, Cregeen, Sara Javornik, Sucgang, Richard, Meng, Qingchang, Qin, Xiang, Avadhanula, Vasanthi, Chao, Hsu, Menon, Vipin, Nicholson, Erin, Henke, David, Piedra, Felipe-Andres, Rajan, Anubama, Momin, Zeineen, Kottapalli, Kavya, Hoffman, Kristi L., Sedlazeck, Fritz J., Metcalf, Ginger, Piedra, Pedro A., Muzny, Donna M., Petrosino, Joseph F., Gibbs, Richard A.
Publicado 2021

Fully resolved assembly of Cryptosporidium parvum

por Menon, Vipin K, Okhuysen, Pablo C, Chappell, Cynthia L, Mahmoud, Medhat, Mahmoud, Medhat, Meng, Qingchang, Doddapaneni, Harsha, Vee, Vanesa, Han, Yi, Salvi, Sejal, Bhamidipati, Sravya, Kottapalli, Kavya, Weissenberger, George, Shen, Hua, Ross, Matthew C, Hoffman, Kristi L, Cregeen, Sara Javornik, Muzny, Donna M, Metcalf, Ginger A, Gibbs, Richard A, Petrosino, Joseph F, Sedlazeck, Fritz J
Publicado 2022

Wastewater sequencing reveals community and variant dynamics of the collective human virome

por Tisza, Michael, Javornik Cregeen, Sara, Avadhanula, Vasanthi, Zhang, Ping, Ayvaz, Tulin, Feliz, Karen, Hoffman, Kristi L., Clark, Justin R., Terwilliger, Austen, Ross, Matthew C., Cormier, Juwan, Moreno, Hannah, Wang, Li, Payne, Katelyn, Henke, David, Troisi, Catherine, Wu, Fuqing, Rios, Janelle, Deegan, Jennifer, Hansen, Blake, Balliew, John, Gitter, Anna, Zhang, Kehe, Li, Runze, Bauer, Cici X., Mena, Kristina D., Piedra, Pedro A., Petrosino, Joseph F., Boerwinkle, Eric, Maresso, Anthony W.
Publicado 2023