Practical estimation of cloud storage costs for clinical genomic data

por Krumm, Niklas, Hoffman, Noah
Publicado 2020

A Format for Phylogenetic Placements

por Matsen, Frederick A., Hoffman, Noah G., Gallagher, Aaron, Stamatakis, Alexandros
Publicado 2012

Evaluating the accuracy of amplicon-based microbiome computational pipelines on simulated human gut microbial communities

por Golob, Jonathan L., Margolis, Elisa, Hoffman, Noah G., Fredricks, David N.
Publicado 2017

The SARS-CoV-2 Omicron Variant Does Not Have Higher Nasal Viral Loads Compared to the Delta Variant in Symptomatic and Asymptomatic Individuals

por Laitman, Andrew M., Lieberman, Joshua A., Hoffman, Noah G., Roychoudhury, Pavitra, Mathias, Patrick C., Greninger, Alexander L.
Publicado 2022

A web application to support the coordination of reflexive, interpretative toxicology testing

por Pablo, Abed, Laha, Thomas J., Breit, Nathan, Hoffman, Noah G., Hoofnagle, Andrew N., Baird, Geoffrey S., Mathias, Patrick C.
Publicado 2023

In Silico Evaluation of Variant Calling Methods for Bacterial Whole-Genome Sequencing Assays

por Seah, Yee Mey, Stewart, Mary K., Hoogestraat, Daniel, Ryder, Molly, Cookson, Brad T., Salipante, Stephen J., Hoffman, Noah G.
Publicado 2023

Complementing 16S rRNA Gene Amplicon Sequencing with Total Bacterial Load To Infer Absolute Species Concentrations in the Vaginal Microbiome

por Tettamanti Boshier, Florencia A., Srinivasan, Sujatha, Lopez, Anthony, Hoffman, Noah G., Proll, Sean, Fredricks, David N., Schiffer, Joshua T.
Publicado 2020

MaLiAmPi enables generalizable and taxonomy-independent microbiome features from technically diverse 16S-based microbiome studies

por Minot, Samuel S., Garb, Bailey, Roldan, Alennie, Tang, Alice S., Oskotsky, Tomiko T., Rosenthal, Christopher, Hoffman, Noah G., Sirota, Marina, Golob, Jonathan L.
Publicado 2023

Metabolic Signatures of Bacterial Vaginosis

por Srinivasan, Sujatha, Morgan, Martin T., Fiedler, Tina L., Djukovic, Danijel, Hoffman, Noah G., Raftery, Daniel, Marrazzo, Jeanne M., Fredricks, David N.
Publicado 2015

Comprehensive evaluation of complex polymicrobial specimens using next generation sequencing and standard microbiological culture

por Cummings, Lisa A., Hoogestraat, Daniel R., Rassoulian-Barrett, Sara L., Rosenthal, Christopher A., Salipante, Stephen J., Cookson, Brad T., Hoffman, Noah G.
Publicado 2020

Organizational preparedness for the use of large language models in pathology informatics

por Hart, Steven N., Hoffman, Noah G., Gershkovich, Peter, Christenson, Chancey, McClintock, David S., Miller, Lauren J., Jackups, Ronald, Azimi, Vahid, Spies, Nicholas, Brodsky, Victor
Publicado 2023

More Than Meets the Eye: Associations of Vaginal Bacteria with Gram Stain Morphotypes Using Molecular Phylogenetic Analysis

por Srinivasan, Sujatha, Morgan, Martin T., Liu, Congzhou, Matsen, Frederick A., Hoffman, Noah G., Fiedler, Tina L., Agnew, Kathy J., Marrazzo, Jeanne M., Fredricks, David N.
Publicado 2013

Associations Between Vaginal Bacteria and Bacterial Vaginosis Signs and Symptoms: A Comparative Study of Kenyan and American Women

por Carter, Kayla A., Balkus, Jennifer E., Anzala, Omu, Kimani, Joshua, Hoffman, Noah G., Fiedler, Tina L., Mochache, Vernon, Fredricks, David N., McClelland, Raymond Scott, Srinivasan, Sujatha
Publicado 2022

Bacterial Communities in Women with Bacterial Vaginosis: High Resolution Phylogenetic Analyses Reveal Relationships of Microbiota to Clinical Criteria

por Srinivasan, Sujatha, Hoffman, Noah G., Morgan, Martin T., Matsen, Frederick A., Fiedler, Tina L., Hall, Robert W., Ross, Frederick J., McCoy, Connor O., Bumgarner, Roger, Marrazzo, Jeanne M., Fredricks, David N.
Publicado 2012

Rapid 16S rRNA Next-Generation Sequencing of Polymicrobial Clinical Samples for Diagnosis of Complex Bacterial Infections

por Salipante, Stephen J., Sengupta, Dhruba J., Rosenthal, Christopher, Costa, Gina, Spangler, Jessica, Sims, Elizabeth H., Jacobs, Michael A., Miller, Samuel I., Hoogestraat, Daniel R., Cookson, Brad T., McCoy, Connor, Matsen, Frederick A., Shendure, Jay, Lee, Clarence C., Harkins, Timothy T., Hoffman, Noah G.
Publicado 2013

Prevalence of Coronavirus Disease 2019 Infection and Outcomes Among Symptomatic Healthcare Workers in Seattle, Washington

por Mani, Nandita S, Budak, Jehan Z, Lan, Kristine F, Bryson-Cahn, Chloe, Zelikoff, Allison, Barker, Gwendolyn E C, Grant, Carolyn W, Hart, Kristi, Barbee, Carrie J, Sandoval, Marissa D, Dostal, Christine L, Corcorran, Maria, Ungerleider, Hal M, Gates, Jeff O, Olin, Svaya V, Bryan, Andrew, Hoffman, Noah G, Marquis, Sara R, Harvey, Michelle L, Nasenbeny, Keri, Mertens, Kathleen, Chew, Lisa D, Greninger, Alexander L, Jerome, Keith R, Pottinger, Paul S, Dellit, Timothy H, Liu, Catherine, Pergam, Steven A, Neme, Santiago, Lynch, John B, Kim, H Nina, Cohen, Seth A
Publicado 2020