Learning supervised embeddings for large scale sequence comparisons

por Kimothi, Dhananjay, Biyani, Pravesh, Hogan, James M., Soni, Akshay, Kelly, Wayne
Publicado 2020

Inferring phylogenies of evolving sequences without multiple sequence alignment

por Chan, Cheong Xin, Bernard, Guillaume, Poirion, Olivier, Hogan, James M., Ragan, Mark A.
Publicado 2014

Metagenomic Geolocation Using Read Signatures

por Chappell , Timothy, Geva , Shlomo, Hogan , James M., Lovell , David, Trotman , Andrew, Perrin , Dimitri
Publicado 2022

Fine-scale differentiation between Bacillus anthracis and Bacillus cereus group signatures in metagenome shotgun data

por Petit III, Robert A., Hogan, James M., Ezewudo, Matthew N., Joseph, Sandeep J., Read, Timothy D.
Publicado 2018

Rapid analysis of metagenomic data using signature-based clustering

por Chappell, Timothy, Geva, Shlomo, Hogan, James M., Huygens, Flavia, Rathnayake, Irani U., Rudd, Stephen, Kelly, Wayne, Perrin, Dimitri
Publicado 2018

Alignment-free inference of hierarchical and reticulate phylogenomic relationships

por Bernard, Guillaume, Chan, Cheong Xin, Chan, Yao-ban, Chua, Xin-Yi, Cong, Yingnan, Hogan, James M, Maetschke, Stefan R, Ragan, Mark A
Publicado 2017