Improving protein-ligand binding site prediction accuracy by classification of inner pocket points using local features

por Krivák, Radoslav, Hoksza, David
Publicado 2015

Scaffold analysis of PubChem database as background for hierarchical scaffold-based visualization

por Velkoborsky, Jakub, Hoksza, David
Publicado 2016

TRAVeLer: a tool for template-based RNA secondary structure visualization

por Elias, Richard, Hoksza, David
Publicado 2017

P2Rank: machine learning based tool for rapid and accurate prediction of ligand binding sites from protein structure

por Krivák, Radoslav, Hoksza, David
Publicado 2018

SProt: sphere-based protein structure similarity algorithm

por Galgonek, Jakub, Hoksza, David, Skopal, Tomáš
Publicado 2011

SETTER: web server for RNA structure comparison

por Čech, Petr, Svozil, Daniel, Hoksza, David
Publicado 2012

MultiSETTER: web server for multiple RNA structure comparison

por Čech, Petr, Hoksza, David, Svozil, Daniel
Publicado 2015

Utilizing knowledge base of amino acids structural neighborhoods to predict protein-protein interaction sites

por Jelínek, Jan, Škoda, Petr, Hoksza, David
Publicado 2017

Molpher: a software framework for systematic chemical space exploration

por Hoksza, David, Škoda, Petr, Voršilák, Milan, Svozil, Daniel
Publicado 2014

MolArt: a molecular structure annotation and visualization tool

por Hoksza, David, Gawron, Piotr, Ostaszewski, Marek, Schneider, Reinhard
Publicado 2018

AHoJ: rapid, tailored search and retrieval of apo and holo protein structures for user-defined ligands

por Feidakis, Christos P, Krivak, Radoslav, Hoksza, David, Novotny, Marian
Publicado 2022

PrankWeb 3: accelerated ligand-binding site predictions for experimental and modelled protein structures

por Jakubec, David, Skoda, Petr, Krivak, Radoslav, Novotny, Marian, Hoksza, David
Publicado 2022

PrankWeb: a web server for ligand binding site prediction and visualization

por Jendele, Lukas, Krivak, Radoslav, Skoda, Petr, Novotny, Marian, Hoksza, David
Publicado 2019

MINERVA API and plugins: opening molecular network analysis and visualization to the community

por Hoksza, David, Gawron, Piotr, Ostaszewski, Marek, Smula, Ewa, Schneider, Reinhard
Publicado 2019

Closing the gap between formats for storing layout information in systems biology

por Hoksza, David, Gawron, Piotr, Ostaszewski, Marek, Hasenauer, Jan, Schneider, Reinhard
Publicado 2019

rPredictorDB: a predictive database of individual secondary structures of RNAs and their formatted plots

por Jelínek, Jan, Hoksza, David, Hajič, Jan, Pešek, Jan, Drozen, Jan, Hladík, Tomáš, Klimpera, Michal, Vohradský, Jiří, Pánek, Josef
Publicado 2019

Delineation of functionally essential protein regions for 242 neurodevelopmental genes

por Iqbal, Sumaiya, Brünger, Tobias, Pérez-Palma, Eduardo, Macnee, Marie, Brunklaus, Andreas, Daly, Mark J, Campbell, Arthur J, Hoksza, David, May, Patrick, Lal, Dennis
Publicado 2022

MISCAST: MIssense variant to protein StruCture Analysis web SuiTe

por Iqbal, Sumaiya, Hoksza, David, Pérez-Palma, Eduardo, May, Patrick, Jespersen, Jakob B, Ahmed, Shehab S, Rifat, Zaara T, Heyne, Henrike O, Rahman, M Sohel, Cottrell, Jeffrey R, Wagner, Florence F, Daly, Mark J, Campbell, Arthur J, Lal, Dennis
Publicado 2020

Visualization of automatically combined disease maps and pathway diagrams for rare diseases

por Gawron, Piotr, Hoksza, David, Piñero, Janet, Peña-Chilet, Maria, Esteban-Medina, Marina, Fernandez-Rueda, Jose Luis, Colonna, Vincenza, Smula, Ewa, Heirendt, Laurent, Ancien, François, Groues, Valentin, Satagopam, Venkata P., Schneider, Reinhard, Dopazo, Joaquin, Furlong, Laura I., Ostaszewski, Marek
Publicado 2023

Comprehensive characterization of amino acid positions in protein structures reveals molecular effect of missense variants

por Iqbal, Sumaiya, Pérez-Palma, Eduardo, Jespersen, Jakob B., May, Patrick, Hoksza, David, Heyne, Henrike O., Ahmed, Shehab S., Rifat, Zaara T., Rahman, M. Sohel, Lage, Kasper, Palotie, Aarno, Cottrell, Jeffrey R., Wagner, Florence F., Daly, Mark J., Campbell, Arthur J., Lal, Dennis
Publicado 2020