The CoFactor database: organic cofactors in enzyme catalysis

por Fischer, Julia D., Holliday, Gemma L., Thornton, Janet M.
Publicado 2010

Evaluating Functional Annotations of Enzymes Using the Gene Ontology

por Holliday, Gemma L., Davidson, Rebecca, Akiva, Eyal, Babbitt, Patricia C.
Publicado 2017

Exploring the Biological and Chemical Complexity of the Ligases

por Holliday, Gemma L., Rahman, Syed Asad, Furnham, Nicholas, Thornton, Janet M.
Publicado 2014

Small Molecule Subgraph Detector (SMSD) toolkit

por Rahman, Syed Asad, Bashton, Matthew, Holliday, Gemma L, Schrader, Rainer, Thornton, Janet M
Publicado 2009

Characterizing the complexity of enzymes on the basis of their mechanisms and structures with a bio-computational analysis

por Holliday, Gemma L, Fischer, Julia D, Mitchell, John B O, Thornton, Janet M
Publicado 2011

EC-BLAST: A Tool to Automatically Search and Compare Enzyme Reactions

por Rahman, Syed Asad, Cuesta, Sergio Martinez, Furnham, Nicholas, Holliday, Gemma L., Thornton, Janet M.
Publicado 2014

A strategy for large-scale comparison of evolutionary- and reaction-based classifications of enzyme function

por Holliday, Gemma L, Brown, Shoshana D, Mischel, David, Polacco, Benjamin J, Babbitt, Patricia C
Publicado 2020

Mechanism and Catalytic Site Atlas (M-CSA): a database of enzyme reaction mechanisms and active sites

por Ribeiro, António J M, Holliday, Gemma L, Furnham, Nicholas, Tyzack, Jonathan D, Ferris, Katherine, Thornton, Janet M
Publicado 2018

MACiE: exploring the diversity of biochemical reactions

por Holliday, Gemma L., Andreini, Claudia, Fischer, Julia D., Rahman, Syed Asad, Almonacid, Daniel E., Williams, Sophie T., Pearson, William R.
Publicado 2012

Exploring the Evolution of Novel Enzyme Functions within Structurally Defined Protein Superfamilies

por Furnham, Nicholas, Sillitoe, Ian, Holliday, Gemma L., Cuff, Alison L., Laskowski, Roman A., Orengo, Christine A., Thornton, Janet M.
Publicado 2012

The Catalytic Site Atlas 2.0: cataloging catalytic sites and residues identified in enzymes

por Furnham, Nicholas, Holliday, Gemma L., de Beer, Tjaart A. P., Jacobsen, Julius O. B., Pearson, William R., Thornton, Janet M.
Publicado 2014

FunTree: a resource for exploring the functional evolution of structurally defined enzyme superfamilies

por Furnham, Nicholas, Sillitoe, Ian, Holliday, Gemma L., Cuff, Alison L., Rahman, Syed A., Laskowski, Roman A., Orengo, Christine A., Thornton, Janet M.
Publicado 2012

MACiE (Mechanism, Annotation and Classification in Enzymes): novel tools for searching catalytic mechanisms

por Holliday, Gemma L., Almonacid, Daniel E., Bartlett, Gail J., O'Boyle, Noel M., Torrance, James W., Murray-Rust, Peter, Mitchell, John B. O., Thornton, Janet M.
Publicado 2007

Reaction Decoder Tool (RDT): extracting features from chemical reactions

por Rahman, Syed Asad, Torrance, Gilliean, Baldacci, Lorenzo, Martínez Cuesta, Sergio, Fenninger, Franz, Gopal, Nimish, Choudhary, Saket, May, John W., Holliday, Gemma L., Steinbeck, Christoph, Thornton, Janet M.
Publicado 2016

The Confidence Information Ontology: a step towards a standard for asserting confidence in annotations

por Bastian, Frederic B., Chibucos, Marcus C., Gaudet, Pascale, Giglio, Michelle, Holliday, Gemma L., Huang, Hong, Lewis, Suzanna E., Niknejad, Anne, Orchard, Sandra, Poux, Sylvain, Skunca, Nives, Robinson-Rechavi, Marc
Publicado 2015

A global view of structure–function relationships in the tautomerase superfamily

por Davidson, Rebecca, Baas, Bert-Jan, Akiva, Eyal, Holliday, Gemma L., Polacco, Benjamin J., LeVieux, Jake A., Pullara, Collin R., Zhang, Yan Jessie, Whitman, Christian P., Babbitt, Patricia C.
Publicado 2018

Biocuration in the structure–function linkage database: the anatomy of a superfamily

por Holliday, Gemma L., Brown, Shoshana D., Akiva, Eyal, Mischel, David, Hicks, Michael A., Morris, John H., Huang, Conrad C., Meng, Elaine C., Pegg, Scott C.-H., Ferrin, Thomas E., Babbitt, Patricia C.
Publicado 2017

Biocuration in the structure–function linkage database: the anatomy of a superfamily

por Holliday, Gemma L., Brown, Shoshana D., Akiva, Eyal, Mischel, David, Hicks, Michael A., Morris, John H., Huang, Conrad C., Meng, Elaine C., Pegg, Scott C.-H., Ferrin, Thomas E., Babbitt, Patricia C.
Publicado 2017

Key challenges for the creation and maintenance of specialist protein resources

por Holliday, Gemma L, Bairoch, Amos, Bagos, Pantelis G, Chatonnet, Arnaud, Craik, David J, Finn, Robert D, Henrissat, Bernard, Landsman, David, Manning, Gerard, Nagano, Nozomi, O’Donovan, Claire, Pruitt, Kim D, Rawlings, Neil D, Saier, Milton, Sowdhamini, Ramanathan, Spedding, Michael, Srinivasan, Narayanaswamy, Vriend, Gert, Babbitt, Patricia C, Bateman, Alex
Publicado 2015

The Structure–Function Linkage Database

por Akiva, Eyal, Brown, Shoshana, Almonacid, Daniel E., Barber, Alan E., Custer, Ashley F., Hicks, Michael A., Huang, Conrad C., Lauck, Florian, Mashiyama, Susan T., Meng, Elaine C., Mischel, David, Morris, John H., Ojha, Sunil, Schnoes, Alexandra M., Stryke, Doug, Yunes, Jeffrey M., Ferrin, Thomas E., Holliday, Gemma L., Babbitt, Patricia C.
Publicado 2014