Phylogenetic analysis of pectin-related gene families in Physcomitrella patens and nine other plant species yields evolutionary insights into cell walls

por McCarthy, Thomas W, Der, Joshua P, Honaas, Loren A, dePamphilis, Claude W, Anderson, Charles T
Publicado 2014

PlantTribes2: Tools for comparative gene family analysis in plant genomics

por Wafula, Eric K., Zhang, Huiting, Von Kuster, Gregory, Leebens-Mack, James H., Honaas, Loren A., dePamphilis, Claude W.
Publicado 2023

Risk versus reward: host dependent parasite mortality rates and phenotypes in the facultative generalist Triphysaria versicolor

por Honaas, Loren A., Jones, Sam, Farrell, Nina, Kamerow, William, Zhang, Huiting, Vescio, Kathryn, Altman, Naomi S., Yoder, John I., dePamphilis, Claude W.
Publicado 2019

Building a foundation for gene family analysis in Rosaceae genomes with a novel workflow: A case study in Pyrus architecture genes

por Zhang, Huiting, Wafula, Eric K., Eilers, Jon, Harkess, Alex E., Ralph, Paula E., Timilsena, Prakash Raj, dePamphilis, Claude W., Waite, Jessica M., Honaas, Loren A.
Publicado 2022

Selecting Superior De Novo Transcriptome Assemblies: Lessons Learned by Leveraging the Best Plant Genome

por Honaas, Loren A., Wafula, Eric K., Wickett, Norman J., Der, Joshua P., Zhang, Yeting, Edger, Patrick P., Altman, Naomi S., Pires, J. Chris, Leebens-Mack, James H., dePamphilis, Claude W.
Publicado 2016

Detecting and Characterizing the Highly Divergent Plastid Genome of the Nonphotosynthetic Parasitic Plant Hydnora visseri (Hydnoraceae)

por Naumann, Julia, Der, Joshua P., Wafula, Eric K., Jones, Samuel S., Wagner, Sarah T., Honaas, Loren A., Ralph, Paula E., Bolin, Jay F., Maass, Erika, Neinhuis, Christoph, Wanke, Stefan, dePamphilis, Claude W.
Publicado 2016

Functional genomics of a generalist parasitic plant: Laser microdissection of host-parasite interface reveals host-specific patterns of parasite gene expression

por Honaas, Loren A, Wafula, Eric K, Yang, Zhenzhen, Der, Joshua P, Wickett, Norman J, Altman, Naomi S, Taylor, Christopher G, Yoder, John I, Timko, Michael P, Westwood, James H, dePamphilis, Claude W
Publicado 2013

Evolution of a horizontally acquired legume gene, albumin 1, in the parasitic plant Phelipanche aegyptiaca and related species

por Zhang, Yeting, Fernandez-Aparicio, Monica, Wafula, Eric K, Das, Malay, Jiao, Yuannian, Wickett, Norman J, Honaas, Loren A, Ralph, Paula E, Wojciechowski, Martin F, Timko, Michael P, Yoder, John I, Westwood, James H, dePamphilis, Claude W
Publicado 2013

Comparative Transcriptome Analyses Reveal Core Parasitism Genes and Suggest Gene Duplication and Repurposing as Sources of Structural Novelty

por Yang, Zhenzhen, Wafula, Eric K., Honaas, Loren A., Zhang, Huiting, Das, Malay, Fernandez-Aparicio, Monica, Huang, Kan, Bandaranayake, Pradeepa C.G., Wu, Biao, Der, Joshua P., Clarke, Christopher R., Ralph, Paula E., Landherr, Lena, Altman, Naomi S., Timko, Michael P., Yoder, John I., Westwood, James H., dePamphilis, Claude W.
Publicado 2015