Comparing serotyping with whole-genome sequencing for subtyping of non-typhoidal Salmonella enterica: a large-scale analysis of 37 serotypes with a public health impact in the USA

por Elnekave, Ehud, Hong, Samuel L., Lim, Seunghyun, Johnson, Timothy J., Perez, Andres, Alvarez, Julio
Publicado 2020

Transmission of Multidrug-Resistant Salmonella enterica Subspecies enterica 4,[5],12:i:- Sequence Type 34 between Europe and the United States

por Elnekave, Ehud, Hong, Samuel L., Lim, Seunghyun, Boxrud, Dave, Rovira, Albert, Mather, Alison E., Perez, Andres, Alvarez, Julio
Publicado 2020

In Search of Covariates of HIV-1 Subtype B Spread in the United States—A Cautionary Tale of Large-Scale Bayesian Phylogeography

por Hong, Samuel L., Dellicour, Simon, Vrancken, Bram, Suchard, Marc A., Pyne, Michael T., Hillyard, David R., Lemey, Philippe, Baele, Guy
Publicado 2020

Variant-specific introduction and dispersal dynamics of SARS-CoV-2 in New York City – from Alpha to Omicron

por Dellicour, Simon, Hong, Samuel L., Hill, Verity, Dimartino, Dacia, Marier, Christian, Zappile, Paul, Harkins, Gordon W., Lemey, Philippe, Baele, Guy, Duerr, Ralf, Heguy, Adriana
Publicado 2023

Dispersal dynamics of SARS-CoV-2 lineages during the first epidemic wave in New York City

por Dellicour, Simon, Hong, Samuel L., Vrancken, Bram, Chaillon, Antoine, Gill, Mandev S., Maurano, Matthew T., Ramaswami, Sitharam, Zappile, Paul, Marier, Christian, Harkins, Gordon W., Baele, Guy, Duerr, Ralf, Heguy, Adriana
Publicado 2021

Accommodating individual travel history and unsampled diversity in Bayesian phylogeographic inference of SARS-CoV-2

por Lemey, Philippe, Hong, Samuel L., Hill, Verity, Baele, Guy, Poletto, Chiara, Colizza, Vittoria, O’Toole, Áine, McCrone, John T., Andersen, Kristian G., Worobey, Michael, Nelson, Martha I., Rambaut, Andrew, Suchard, Marc A.
Publicado 2020

SARS-CoV-2 European resurgence foretold: interplay of introductions and persistence by leveraging genomic and mobility data

por Lemey, Philippe, Ruktanonchai, Nick, Hong, Samuel L., Colizza, Vittoria, Poletto, Chiara, Van den Broeck, Frederik, Gill, Mandev S., Ji, Xiang, Levasseur, Anthony, Sadilek, Adam, Lai, Shengjie, Tatem, Andrew J., Baele, Guy, Suchard, Marc A., Dellicour, Simon
Publicado 2021

Exploiting genomic surveillance to map the spatio-temporal dispersal of SARS-CoV-2 spike mutations in Belgium across 2020

por Bollen, Nena, Artesi, Maria, Durkin, Keith, Hong, Samuel L., Potter, Barney, Boujemla, Bouchra, Vanmechelen, Bert, Martí-Carreras, Joan, Wawina-Bokalanga, Tony, Meex, Cécile, Bontems, Sébastien, Hayette, Marie-Pierre, André, Emmanuel, Maes, Piet, Bours, Vincent, Baele, Guy, Dellicour, Simon
Publicado 2021

Investigation of an international water polo tournament in Czechia as a potential source for early introduction of the SARS-CoV-2 Omicron variant into Belgium, Switzerland and Germ...

por Rudin, Christoph, Bollen, Nena, Hong, Samuel L, Wegner, Fanny, Politi, Lida, Mellou, Kassiani, Geenen, Caspar, Gorissen, Sarah, Verhasselt, Bruno, Durkin, Keith, Henin, Coralie, Logist, Anne-Sophie, Dellicour, Simon, Resa, Tobias, Stadler, Tanja, Maes, Piet, Cuypers, Lize, André, Emmanuel, Egli, Adrian, Baele, Guy
Publicado 2023

A Phylodynamic Workflow to Rapidly Gain Insights into the Dispersal History and Dynamics of SARS-CoV-2 Lineages

por Dellicour, Simon, Durkin, Keith, Hong, Samuel L, Vanmechelen, Bert, Martí-Carreras, Joan, Gill, Mandev S, Meex, Cécile, Bontems, Sébastien, André, Emmanuel, Gilbert, Marius, Walker, Conor, Maio, Nicola De, Faria, Nuno R, Hadfield, James, Hayette, Marie-Pierre, Bours, Vincent, Wawina-Bokalanga, Tony, Artesi, Maria, Baele, Guy, Maes, Piet
Publicado 2020

Evaluation of Screening Program and Phylogenetic Analysis of SARS-CoV-2 Infections among Hospital Healthcare Workers in Liège, Belgium

por El Moussaoui, Majdouline, Maes, Nathalie, Hong, Samuel L., Lambert, Nicolas, Gofflot, Stéphanie, Dellot, Patricia, Belhadj, Yasmine, Huynen, Pascale, Hayette, Marie-Pierre, Meex, Cécile, Bontems, Sébastien, Defêche, Justine, Godderis, Lode, Molenberghs, Geert, Meuris, Christelle, Artesi, Maria, Durkin, Keith, Rahmouni, Souad, Grégoire, Céline, Beguin, Yves, Moutschen, Michel, Dellicour, Simon, Darcis, Gilles
Publicado 2022

Delta-Omicron recombinant escapes therapeutic antibody neutralization

por Duerr, Ralf, Zhou, Hao, Tada, Takuya, Dimartino, Dacia, Marier, Christian, Zappile, Paul, Wang, Guiqing, Plitnick, Jonathan, Griesemer, Sara B., Girardin, Roxanne, Machowski, Jessica, Bialosuknia, Sean, Lasek-Nesselquist, Erica, Hong, Samuel L., Baele, Guy, Dittmann, Meike, Ortigoza, Mila B., Prasad, Prithiv J., McDonough, Kathleen, Landau, Nathaniel R., St George, Kirsten, Heguy, Adriana
Publicado 2023

Variant Analysis of SARS-CoV-2 Genomes from Belgian Military Personnel Engaged in Overseas Missions and Operations

por Pirnay, Jean-Paul, Selhorst, Philippe, Hong, Samuel L., Cochez, Christel, Potter, Barney, Maes, Piet, Petrillo, Mauro, Dudas, Gytis, Claes, Vincent, Van der Beken, Yolien, Verbeken, Gilbert, Degueldre, Julie, Dellicour, Simon, Cuypers, Lize, T’Sas, France, Van den Eede, Guy, Verhasselt, Bruno, Weuts, Wouter, Smets, Cedric, Mertens, Jan, Geeraerts, Philippe, Ariën, Kevin K., André, Emmanuel, Neirinckx, Pierre, Soentjens, Patrick, Baele, Guy
Publicado 2021

The phylodynamics of SARS-CoV-2 during 2020 in Finland

por Truong Nguyen, Phuoc, Kant, Ravi, Van den Broeck, Frederik, Suvanto, Maija T., Alburkat, Hussein, Virtanen, Jenni, Ahvenainen, Ella, Castren, Robert, Hong, Samuel L., Baele, Guy, Ahava, Maarit J., Jarva, Hanna, Jokiranta, Suvi Tuulia, Kallio-Kokko, Hannimari, Kekäläinen, Eliisa, Kirjavainen, Vesa, Kortela, Elisa, Kurkela, Satu, Lappalainen, Maija, Liimatainen, Hanna, Suchard, Marc A., Hannula, Sari, Ellonen, Pekka, Sironen, Tarja, Lemey, Philippe, Vapalahti, Olli, Smura, Teemu
Publicado 2022

Two Years of Genomic Surveillance in Belgium during the SARS-CoV-2 Pandemic to Attain Country-Wide Coverage and Monitor the Introduction and Spread of Emerging Variants

por Cuypers, Lize, Dellicour, Simon, Hong, Samuel L., Potter, Barney I., Verhasselt, Bruno, Vereecke, Nick, Lambrechts, Laurens, Durkin, Keith, Bours, Vincent, Klamer, Sofieke, Bayon-Vicente, Guillaume, Vael, Carl, Ariën, Kevin K., De Mendonca, Ricardo, Soetens, Oriane, Michel, Charlotte, Bearzatto, Bertrand, Naesens, Reinout, Gras, Jeremie, Vankeerberghen, Anne, Matheeussen, Veerle, Martens, Geert, Obbels, Dagmar, Lemmens, Ann, Van den Poel, Bea, Van Even, Ellen, De Rauw, Klara, Waumans, Luc, Reynders, Marijke, Degosserie, Jonathan, Maes, Piet, André, Emmanuel, Baele, Guy
Publicado 2022

Emergence and spread of SARS-CoV-2 lineage B.1.620 with variant of concern-like mutations and deletions

por Dudas, Gytis, Hong, Samuel L., Potter, Barney I., Calvignac-Spencer, Sébastien, Niatou-Singa, Frédéric S., Tombolomako, Thais B., Fuh-Neba, Terence, Vickos, Ulrich, Ulrich, Markus, Leendertz, Fabian H., Khan, Kamran, Huber, Carmen, Watts, Alexander, Olendraitė, Ingrida, Snijder, Joost, Wijnant, Kim N., Bonvin, Alexandre M.J.J., Martres, Pascale, Behillil, Sylvie, Ayouba, Ahidjo, Maidadi, Martin Foudi, Djomsi, Dowbiss Meta, Godwe, Celestin, Butel, Christelle, Šimaitis, Aistis, Gabrielaitė, Miglė, Katėnaitė, Monika, Norvilas, Rimvydas, Raugaitė, Ligita, Koyaweda, Giscard Wilfried, Kandou, Jephté Kaleb, Jonikas, Rimvydas, Nasvytienė, Inga, Žemeckienė, Živilė, Gečys, Dovydas, Tamušauskaitė, Kamilė, Norkienė, Milda, Vasiliūnaitė, Emilija, Žiogienė, Danguolė, Timinskas, Albertas, Šukys, Marius, Šarauskas, Mantas, Alzbutas, Gediminas, Aziza, Adrienne Amuri, Lusamaki, Eddy Kinganda, Cigolo, Jean-Claude Makangara, Mawete, Francisca Muyembe, Lofiko, Emmanuel Lokilo, Kingebeni, Placide Mbala, Tamfum, Jean-Jacques Muyembe, Belizaire, Marie Roseline Darnycka, Essomba, René Ghislain, Assoumou, Marie Claire Okomo, Mboringong, Akenji Blaise, Dieng, Alle Baba, Juozapaitė, Dovilė, Hosch, Salome, Obama, Justino, Ayekaba, Mitoha Ondo’o, Naumovas, Daniel, Pautienius, Arnoldas, Rafaï, Clotaire Donatien, Vitkauskienė, Astra, Ugenskienė, Rasa, Gedvilaitė, Alma, Čereškevičius, Darius, Lesauskaitė, Vaiva, Žemaitis, Lukas, Griškevičius, Laimonas, Baele, Guy
Publicado 2021