RUBIC identifies driver genes by detecting recurrent DNA copy number breaks

por van Dyk, Ewald, Hoogstraat, Marlous, ten Hoeve, Jelle, Reinders, Marcel J. T., Wessels, Lodewyk F. A.
Publicado 2016

PRI-CAT: a web-tool for the analysis, storage and visualization of plant ChIP-seq experiments

por Muiño, Jose M., Hoogstraat, Marlous, van Ham, Roeland C. H. J., van Dijk, Aalt D. J.
Publicado 2011

GPCR-SAS: A web application for statistical analyses on G protein-coupled receptors sequences

por Gómez Tamayo, José Carlos, Olivella, Mireia, Ríos, Santiago, Hoogstraat, Marlous, Gonzalez, Angel, Mayol, Eduardo, Deupi, Xavier, Campillo, Mercedes, Cordomí, Arnau
Publicado 2018

Next generation sequencing of triple negative breast cancer to find predictors for chemotherapy response

por Lips, Esther H., Michaut, Magali, Hoogstraat, Marlous, Mulder, Lennart, Besselink, Nicolle JM, Koudijs, Marco J., Cuppen, Edwin, Voest, Emile E., Bernards, Rene, Nederlof, Petra M., Wesseling, Jelle, Rodenhuis, Sjoerd, Wessels, Lodewyk FA
Publicado 2015

Comprehensive characterization of pre- and post-treatment samples of breast cancer reveal potential mechanisms of chemotherapy resistance

por Hoogstraat, Marlous, Lips, Esther H., Mayayo-Peralta, Isabel, Mulder, Lennart, Kristel, Petra, van der Heijden, Ingrid, Annunziato, Stefano, van Seijen, Maartje, Nederlof, Petra M., Sonke, Gabe S., Zwart, Wilbert, Wesseling, Jelle, Wessels, Lodewyk F. A.
Publicado 2022

CopywriteR: DNA copy number detection from off-target sequence data

por Kuilman, Thomas, Velds, Arno, Kemper, Kristel, Ranzani, Marco, Bombardelli, Lorenzo, Hoogstraat, Marlous, Nevedomskaya, Ekaterina, Xu, Guotai, de Ruiter, Julian, Lolkema, Martijn P, Ylstra, Bauke, Jonkers, Jos, Rottenberg, Sven, Wessels, Lodewyk F, Adams, David J, Peeper, Daniel S, Krijgsman, Oscar
Publicado 2015

Mammary tumor-derived CCL2 enhances pro-metastatic systemic inflammation through upregulation of IL1β in tumor-associated macrophages

por Kersten, Kelly, Coffelt, Seth B., Hoogstraat, Marlous, Verstegen, Niels J.M., Vrijland, Kim, Ciampricotti, Metamia, Doornebal, Chris W., Hau, Cheei-Sing, Wellenstein, Max D., Salvagno, Camilla, Doshi, Parul, Lips, Esther H., Wessels, Lodewyk F.A., de Visser, Karin E.
Publicado 2017

Reduced NCOR2 expression accelerates androgen deprivation therapy failure in prostate cancer

por Long, Mark D., Jacobi, Justine J., Singh, Prashant K., Llimos, Gerard, Wani, Sajad A., Rowsam, Aryn M., Rosario, Spencer R., Hoogstraat, Marlous, Linder, Simon, Kirk, Jason, Affronti, Hayley C., Bergman, Andries, Zwart, Wilbert, Campbell, Moray J., Smiraglia, Dominic J.
Publicado 2021

Chromothripsis is a common mechanism driving genomic rearrangements in primary and metastatic colorectal cancer

por Kloosterman, Wigard P, Hoogstraat, Marlous, Paling, Oscar, Tavakoli-Yaraki, Masoumeh, Renkens, Ivo, Vermaat, Joost S, van Roosmalen, Markus J, van Lieshout, Stef, Nijman, Isaac J, Roessingh, Wijnand, van 't Slot, Ruben, van de Belt, José, Guryev, Victor, Koudijs, Marco, Voest, Emile, Cuppen, Edwin
Publicado 2011

Ovarian Cancer Cell Line Panel (OCCP): Clinical Importance of In Vitro Morphological Subtypes

por Beaufort, Corine M., Helmijr, Jean C. A., Piskorz, Anna M., Hoogstraat, Marlous, Ruigrok-Ritstier, Kirsten, Besselink, Nicolle, Murtaza, Muhammed, van IJcken, Wilfred F. J., Heine, Anouk A. J., Smid, Marcel, Koudijs, Marco J., Brenton, James D., Berns, Els M. J. J., Helleman, Jozien
Publicado 2014

TP53 mutated glioblastoma stem-like cell cultures are sensitive to dual mTORC1/2 inhibition while resistance in TP53 wild type cultures can be overcome by combined inhibition of mT...

por Venkatesan, Subramanian, Hoogstraat, Marlous, Caljouw, Ester, Pierson, Tessa, Spoor, Jochem K.H., Zeneyedpour, Lona, Dubbink, Hendrikus J., Dekker, Lennard J., van der Kaaij, Mariëlle, Kloezeman, Jenneke, Berghauser Pont, Lotte M.E., Besselink, Nicolle J.M., Luider, Theo M., Joore, Jos, Martens, John W., Lamfers, Martine L.M., Sleijfer, Stefan, Leenstra, Sieger
Publicado 2016

Genomic and transcriptomic plasticity in treatment-naïve ovarian cancer

por Hoogstraat, Marlous, de Pagter, Mirjam S., Cirkel, Geert A., van Roosmalen, Markus J., Harkins, Timothy T., Duran, Karen, Kreeftmeijer, Jennifer, Renkens, Ivo, Witteveen, Petronella O., Lee, Clarence C., Nijman, Isaac J., Guy, Tanisha, van ’t Slot, Ruben, Jonges, Trudy N., Lolkema, Martijn P., Koudijs, Marco J., Zweemer, Ronald P., Voest, Emile E., Cuppen, Edwin, Kloosterman, Wigard P.
Publicado 2014

Functional mapping of androgen receptor enhancer activity

por Huang, Chia-Chi Flora, Lingadahalli, Shreyas, Morova, Tunc, Ozturan, Dogancan, Hu, Eugene, Yu, Ivan Pak Lok, Linder, Simon, Hoogstraat, Marlous, Stelloo, Suzan, Sar, Funda, van der Poel, Henk, Altintas, Umut Berkay, Saffarzadeh, Mohammadali, Le Bihan, Stephane, McConeghy, Brian, Gokbayrak, Bengul, Feng, Felix Y., Gleave, Martin E., Bergman, Andries M., Collins, Colin, Hach, Faraz, Zwart, Wilbert, Emberly, Eldon, Lack, Nathan A.
Publicado 2021

Robust BRCA1‐like classification of copy number profiles of samples repeated across different datasets and platforms

por Schouten, Philip C., Grigoriadis, Anita, Kuilman, Thomas, Mirza, Hasan, Watkins, Johnathan A., Cooke, Saskia A., van Dyk, Ewald, Severson, Tesa M., Rueda, Oscar M., Hoogstraat, Marlous, Verhagen, Caroline V.M., Natrajan, Rachael, Chin, Suet-Feung, Lips, Esther H., Kruizinga, Janneke, Velds, Arno, Nieuwland, Marja, Kerkhoven, Ron M., Krijgsman, Oscar, Vens, Conchita, Peeper, Daniel, Nederlof, Petra M., Caldas, Carlos, Tutt, Andrew N., Wessels, Lodewyk F., Linn, Sabine C.
Publicado 2015

Predicting clinical benefit from everolimus in patients with advanced solid tumors, the CPCT-03 study

por Weeber, Fleur, Cirkel, Geert A., Hoogstraat, Marlous, Bins, Sander, Gadellaa-van Hooijdonk, Christa G.M., Ooft, Salo, van Werkhoven, Erik, Willems, Stefan M., van Stralen, Marijn, Veldhuis, Wouter B., Besselink, Nicolle J.M., Horlings, Hugo M., Steeghs, Neeltje, de Jonge, Maja J., Langenberg, Marlies H.G., Wessels, Lodewyk F.A., Cuppen, Edwin P.J.G., Schellens, J.H., Sleijfer, Stefan, Lolkema, Martijn P., Voest, Emile E.
Publicado 2017

Long-term prognosis of young breast cancer patients (≤40 years) who did not receive adjuvant systemic treatment: protocol for the PARADIGM initiative cohort study

por Dackus, Gwen MHE, ter Hoeve, Natalie D, Opdam, Mark, Vreuls, Willem, Varga, Zsuzsanna, Koop, Esther, Willems, Stefan M, Van Deurzen, Carolien HM, Groen, Emilie J, Cordoba, Alicia, Bart, Jos, Mooyaart, Antien L, van den Tweel, Jan G, Zolota, Vicky, Wesseling, Jelle, Sapino, Anna, Chmielik, Ewa, Ryska, Ales, Amant, Frederic, Broeks, Annegien, Kerkhoven, Ron, Stathonikos, Nikolas, Veta, Mitko, Voogd, Adri, Jozwiak, Katarzyna, Hauptmann, Michael, Hoogstraat, Marlous, Schmidt, Marjanka K, Sonke, Gabe, van der Wall, Elsken, Siesling, Sabine, van Diest, Paul J, Linn, Sabine C
Publicado 2017

Differential Survival and Therapy Benefit of Patients with Breast Cancer Are Characterized by Distinct Epithelial and Immune Cell Microenvironments

por Kester, Lennart, Seinstra, Danielle, van Rossum, Annelot G.J., Vennin, Claire, Hoogstraat, Marlous, van der Velden, Daphne, Opdam, Mark, van Werkhoven, Erik, Hahn, Kerstin, Nederlof, Iris, Lips, Ester H., Mandjes, Ingrid A.M., van Leeuwen-Stok, A. Elise, Canisius, Sander, van Tinteren, Harm, Imholz, Alex L.T., Portielje, Johanneke E.A., Bos, Monique E.M.M., Bakker, Sandra D., Rutgers, Emiel J., Horlings, Hugo M., Wesseling, Jelle, Voest, Emile E., Wessels, Lodewyk F.A., Kok, Marleen, Oosterkamp, Hendrika M., van Oudenaarden, Alexander, Linn, Sabine C., van Rheenen, Jacco
Publicado 2022

Genomic analysis defines clonal relationships of ductal carcinoma in situ and recurrent invasive breast cancer

por Lips, Esther H., Kumar, Tapsi, Megalios, Anargyros, Visser, Lindy L., Sheinman, Michael, Fortunato, Angelo, Shah, Vandna, Hoogstraat, Marlous, Sei, Emi, Mallo, Diego, Roman-Escorza, Maria, Ahmed, Ahmed A., Xu, Mingchu, van den Belt-Dusebout, Alexandra W., Brugman, Wim, Casasent, Anna K., Clements, Karen, Davies, Helen R., Fu, Liping, Grigoriadis, Anita, Hardman, Timothy M., King, Lorraine M., Krete, Marielle, Kristel, Petra, de Maaker, Michiel, Maley, Carlo C., Marks, Jeffrey R., Menegaz, Brian A., Mulder, Lennart, Nieboer, Frank, Nowinski, Salpie, Pinder, Sarah, Quist, Jelmar, Salinas-Souza, Carolina, Schaapveld, Michael, Schmidt, Marjanka K., Shaaban, Abeer M., Shami, Rana, Sridharan, Mathini, Zhang, John, Stobart, Hilary, Collyar, Deborah, Nik-Zainal, Serena, Wessels, Lodewyk F. A., Hwang, E. Shelley, Navin, Nicholas E., Futreal, P. Andrew, Thompson, Alastair M., Wesseling, Jelle, Sawyer, Elinor J.
Publicado 2022